Browse Element(s) Details


OsAffx.26978.1.S1_at

Description tigr:9633.m02057
TID=OsAffx.26978.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g232707/11hypothetical protein
LOC_Os04g040702/11hypothetical protein
LOC_Os10g409501/11Major myo-inositol transporter iolT, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23240OsAffx.26977.1.S1_at11/115+13183290..13184183Zinc knuckle family protein
LOC_Os05g23250OsAffx.14788.1.S1_at11/115+13191900..13199470Leucine Rich Repeat family protein, expressed
LOC_Os05g23260Os.8610.1.S1_at11/115+13204696..13208436Microsomal signal peptidase 18 kDa subunit, putative, expressed
LOC_Os05g23270OsAffx.26978.1.S1_at7/115+13208296..13209842hypothetical protein
LOC_Os05g23280OsAffx.1647.1.S1_at1/115+13211817..13214198retrotransposon protein, putative, unclassified
LOC_Os05g23290Os.9332.2.S1_x_at2/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290OsAffx.22722.1.S1_x_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23290Os.9332.2.S1_at1/115+13215584..13220428retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23300NANA5+13222759..13224075retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23310NANA5+13228106..13228342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g23320Os.27127.1.S1_a_at11/115+13230517..13234739expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26978.1.S1_at--334--6931Chr04:1866237..1866493 (25 bp)
GTAGGCGGCACTTGGGATAAGTCCA
LOC_Os04g04070
OsAffx.26978.1.S1_at--543--8611NONE
TGGGATAAGTCCAAACTCACTTTTG
NONE
OsAffx.26978.1.S1_at--134--352Chr10:21664611..21664779 (25 bp)
ATAAACGTGCTCGTCCGCAATGGCC
LOC_Os10g40950
OsAffx.26978.1.S1_at--686--8131Chr05:13208567..13208591 (25 bp)
GGACAGGTGCCAAGCTAATACTACA
LOC_Os05g23270
OsAffx.26978.1.S1_at--586--10151Chr05:13208539..13208563 (25 bp)
TATCGCCAATCCTTTCTTAAATCTC
LOC_Os05g23270
OsAffx.26978.1.S1_at--849--2891Chr05:13208512..13208536 (25 bp)
AAGGTCCATGGAGAACAGGCTGCTA
LOC_Os05g23270
OsAffx.26978.1.S1_at--666--2831Chr05:13208481..13208505 (25 bp)
AAGTTTGCTACAGACGACAAGGCTG
LOC_Os05g23270
OsAffx.26978.1.S1_at--125--2231NONE
ACAAGGCTGTACAGTGATGCCAGTT
NONE
OsAffx.26978.1.S1_at--863--6351Chr05:13208389..13208474 (25 bp)
GATGCCAGTTGTCAATAGCTACAGA
LOC_Os05g23270
OsAffx.26978.1.S1_at--69--311Chr05:13208375..13208399 (25 bp)
ATAGCTACAGAGCTCATCTCTCTTC
LOC_Os05g23270
OsAffx.26978.1.S1_at--550--451Chr05:13208360..13208384 (25 bp)
ATCTCTCTTCATCAGTTACTTGTCA
LOC_Os05g23270
Target Sequence 
GTAGGCGGCACTTGGGATAAGTCCAAACTCACTTTTGGGGGGAAAACACTCCATAAACGTGCTCGTCCGCAATGGCCTCG
AAGCACCTCCCGCTTCCACGACGCCATGCGGACCATCCACGCCGTCGTGGCGATGGCTGGCNNNNNNGNNNNNNNNCNNC
NNNGCNAGCACAACGTCGAGAGGTTCGGCGCCTACGACNGCGTCGCCGACGACAANGCGCCGGTGGTCGTGCCTGGCNTG
GCGAGGANGATCGAGGTCACGCGGGCGCAGGCCCCGGGCTTCTTCCGCGTCNCCNGGTGGGACAAGTTCGCCGACGACGT
GGAGCGCAGGTNNTTATTTGAAATGGACAGGTGCCAAGCTAATACTACAAAATATCGCCAATCCTTTCTTAAATCTCAAA
AGGTCCATGGAGAACAGGCTGCTAAATTGCAAGTTTGCTACAGACGACAAGGCTGTACAGTGATGCCAGTTGTCAATAGC
TACAGAGCTCATCTCTCTTCATCAGTTACTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis