Browse Element(s) Details


OsAffx.27064.1.S1_at

Description tigr:9633.m02621
TID=OsAffx.27064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2865011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28640NANA5+16713058..16713357hypothetical protein
LOC_Os05g28650OsAffx.27064.1.S1_at11/115+16730886..16731134hypothetical protein
LOC_Os05g28660OsAffx.21375.2.S1_at1/115+16732685..16735017retrotransposon protein, putative, LINE subclass
LOC_Os05g28670NANA5+16736215..16739239hypothetical protein
LOC_Os05g28680OsAffx.20387.1.S1_x_at2/115+16740304..16746018retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28690OsAffx.4459.1.S1_at11/115+16749313..16750966hypothetical protein
LOC_Os05g28700NANA5+16751664..16754297retrotransposon protein, putative, unclassified
LOC_Os05g28710Os.9610.1.S1_s_at11/115+16754545..16758942expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27064.1.S1_at--378--3751Chr05:16731080..16731104 (25 bp)
CTCACGTCTAGTGGATCCGGTGACG
LOC_Os05g28650
OsAffx.27064.1.S1_at--406--11Chr05:16731071..16731095 (25 bp)
AGTGGATCCGGTGACGGTACCCTCA
LOC_Os05g28650
OsAffx.27064.1.S1_at--606--551Chr05:16731066..16731090 (25 bp)
ATCCGGTGACGGTACCCTCATGCAG
LOC_Os05g28650
OsAffx.27064.1.S1_at--727--8931Chr05:16731060..16731084 (25 bp)
TGACGGTACCCTCATGCAGGTACGG
LOC_Os05g28650
OsAffx.27064.1.S1_at--488--1811Chr05:16731053..16731077 (25 bp)
ACCCTCATGCAGGTACGGGAGAAGC
LOC_Os05g28650
OsAffx.27064.1.S1_at--489--4711Chr05:16730996..16731020 (25 bp)
GCGGCCTCACGAAGAGCTGGGCACA
LOC_Os05g28650
OsAffx.27064.1.S1_at--309--9691Chr05:16730990..16731014 (25 bp)
TCACGAAGAGCTGGGCACAGTGGCC
LOC_Os05g28650
OsAffx.27064.1.S1_at--716--1611Chr05:16730982..16731006 (25 bp)
AGCTGGGCACAGTGGCCTGGCCTCA
LOC_Os05g28650
OsAffx.27064.1.S1_at--358--1091Chr05:16730972..16730996 (25 bp)
AGTGGCCTGGCCTCAGGAGCGCGGG
LOC_Os05g28650
OsAffx.27064.1.S1_at--774--7491Chr05:16730946..16730970 (25 bp)
GTGGTGGTGGAACTCCGGCGACGAC
LOC_Os05g28650
OsAffx.27064.1.S1_at--877--1811Chr05:16730923..16730947 (25 bp)
ACGCCAGCTCGGGACGGGCAGATTC
LOC_Os05g28650
Target Sequence 
CTCACGTCTAGTGGATCCGGTGACGGTACCCTCATGCAGGTACGGGAGAAGCGCGCCGGGGGGGAGGGTGGGGGGGGTGG
TGAGGCGGCCTCACGAAGAGCTGGGCACAGTGGCCTGGCCTCAGGAGCGCGGGGGTGGTGGTGGAACTCCGGCGACGACG
CCAGCTCGGGACGGGCAGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis