Browse Element(s) Details


OsAffx.27085.1.S1_at

Description tigr:9633.m02767
TID=OsAffx.27085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g304709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30420Os.55569.1.S1_at10/115+17550003..17552334expressed protein
LOC_Os05g30430Os.9888.1.S1_at11/115+17556799..17560313expressed protein
LOC_Os05g30440OsAffx.27084.1.S1_at11/115+17560522..17561175hypothetical protein
LOC_Os05g30454Os.55625.1.S1_at11/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.24949.2.S1_at4/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30454OsAffx.9087.1.S1_at2/115+17563862..17568673Thiamin pyrophosphokinase, catalytic domain containing protein, expressed
LOC_Os05g30470OsAffx.27085.1.S1_at9/115+17574963..17575793hypothetical protein
LOC_Os05g30480Os.54759.1.S1_at1/115+17578611..17580620Luminal binding protein 4 precursor, putative, expressed
LOC_Os05g30490NANA5+17583469..17584251Harpin-induced protein 1 containing protein
LOC_Os05g30500OsAffx.14888.1.S1_at11/115+17589788..17590596expressed protein
LOC_Os05g30510OsAffx.4475.1.S1_at6/115+17599508..17600668expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27085.1.S1_at--600--1231Chr05:17575040..17575064 (25 bp)
AGTTGTAGGTAGCAGTTCCTCCTCG
LOC_Os05g30470
OsAffx.27085.1.S1_at--857--9231Chr05:17575056..17575080 (25 bp)
TCCTCCTCGGGTGTTGGTGGTCGAA
LOC_Os05g30470
OsAffx.27085.1.S1_at--525--10431Chr05:17575086..17575110 (25 bp)
TTATCTGCGGGAGGTTTGCACCAAA
LOC_Os05g30470
OsAffx.27085.1.S1_at--1021--10731Chr05:17575101..17575125 (25 bp)
TTGCACCAAATCTACCACCATGGAG
LOC_Os05g30470
OsAffx.27085.1.S1_at--469--6991Chr05:17575126..17575150 (25 bp)
GTACTGTTCCAGGTTCGAGTGACCC
LOC_Os05g30470
OsAffx.27085.1.S1_at--317--4191Chr05:17575150..17575174 (25 bp)
CCCTAGGTCCTCCAAGTGATGAGAT
LOC_Os05g30470
OsAffx.27085.1.S1_at--54--231Chr05:17575175..17575199 (25 bp)
ATATCATCATGGTGGTACCGTCCCA
LOC_Os05g30470
OsAffx.27085.1.S1_at--318--4191NONE
CCCTTATGTCCTCCGAGTGATGAGA
NONE
OsAffx.27085.1.S1_at--1148--1791NONE
ACCCCATAGGTGATCCTCCAATTGA
NONE
OsAffx.27085.1.S1_at--709--292Chr05:17575362..17575386 (25 bp)
ATAGATCCTCCTCCAAGTGATGAGA
LOC_Os05g30470
OsAffx.27085.1.S1_at--378--352Chr05:17575552..17575576 (25 bp)
ATAACCGTGGTGGTCATCACACTGC
LOC_Os05g30470
Target Sequence 
AGTTGTAGGTAGCAGTTCCTCCTCGGGTGTTGGTGGTCGAAAAGTTTTATCTGCGGGAGGTTTGCACCAAATCTACCACC
ATGGAGGTACTGTTCCAGGTTCGAGTGACCCCCTAGGTCCTCCAAGTGATGAGATATATCATCATGGTGGTACCGTCCCA
GGTCCGAGTGACCCCTTATGTCCTCCGAGTGATGAGATATATCGCCATGGTGGTGGCCACCATACTACCCCGGGCCCGAG
TGACCCCATAGGTGATCCTCCAATTGATGAGATATATGGTCATGGAGGTGGCCACCACACTGCACCGGGCCCGAGTGACC
CCATAGATCCTCCTCCAAGTGATGAGATATATAACCGTGGTGGTCATCACACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis