Browse Element(s) Details


OsAffx.4475.1.S1_at

Description tigr:9633.m02771
TID=OsAffx.4475.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g305106/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30470OsAffx.27085.1.S1_at9/115+17574963..17575793hypothetical protein
LOC_Os05g30480Os.54759.1.S1_at1/115+17578611..17580620Luminal binding protein 4 precursor, putative, expressed
LOC_Os05g30490NANA5+17583469..17584251Harpin-induced protein 1 containing protein
LOC_Os05g30500OsAffx.14888.1.S1_at11/115+17589788..17590596expressed protein
LOC_Os05g30510OsAffx.4475.1.S1_at6/115+17599508..17600668expressed protein
LOC_Os05g30520NANA5+17605072..17606172retrotransposon protein, putative, unclassified
LOC_Os05g30530Os.8428.1.S1_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.47405.1.A1_s_at11/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30530Os.40563.1.S1_x_at1/115+17612112..1761479840S ribosomal protein S4, putative, expressed
LOC_Os05g30540Os.47130.4.A1_x_at4/115+17617793..17619303retrotransposon protein, putative, unclassified
LOC_Os05g30540OsAffx.28164.2.S1_at1/115+17617793..17619303retrotransposon protein, putative, unclassified
LOC_Os05g30550Os.28943.1.S1_x_at4/115+17620169..17623346retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_x_at2/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560Os.27544.1.A1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4475.1.S1_at--576--2971Chr05:17599676..17599700 (25 bp)
AATGTGGATCGGAGCGGCGGTGTCG
LOC_Os05g30510
OsAffx.4475.1.S1_at--1086--9531Chr05:17599758..17599782 (25 bp)
TCTACGCGCTGGTCGCCAACGTGCG
LOC_Os05g30510
OsAffx.4475.1.S1_at--1005--3891Chr05:17599766..17599790 (25 bp)
CTGGTCGCCAACGTGCGGGCCATGA
LOC_Os05g30510
OsAffx.4475.1.S1_at--1112--2571NONE
AACGTGGTGTGATAGGTGCGCTTCC
NONE
OsAffx.4475.1.S1_at--1005--8611NONE
TGGTGTGATAGGTGCGCTTCCCCAC
NONE
OsAffx.4475.1.S1_at--899--271NONE
ATAGGTGCGCTTCCCCACCAAAGGT
NONE
OsAffx.4475.1.S1_at--568--9111NONE
TGCGCTTCCCCACCAAAGGTTGACG
NONE
OsAffx.4475.1.S1_at--706--4351NONE
CCAGAGCGCCGCCGATTGAGATTGA
NONE
OsAffx.4475.1.S1_at--868--1251Chr05:17600575..17600599 (25 bp)
AGATTTGCAATTAGTCTTTGACTTA
LOC_Os05g30510
OsAffx.4475.1.S1_at--633--5691Chr05:17600594..17600618 (25 bp)
GACTTAGAAGACTCATTATTTTTGG
LOC_Os05g30510
OsAffx.4475.1.S1_at--957--10411Chr05:17600609..17600633 (25 bp)
TTATTTTTGGATGTGGAAGCTGGAG
LOC_Os05g30510
Target Sequence 
AATGTGGATCGGAGCGGCGGTGTCGCCGCCGCCGGCGAGGCGGAGGAGGACGAGGACGACGAGCAGCGGGCCGTGGAGAG
GTTCTACGCGCTGGTCGCCAACGTGCGGGCCATGAGGGGCATGTACAGGAGCAGCGGCGACGGCGCCAGCGCGGACAGCG
CCACCGGCGGTAATGCCGGCGGCGGCGGGGAGAGGAAGCGGGCGAGGCGCGCCGACCAGCCGTGGAGGCCGGTGTGGGAG
AGTGAGAACAAAATGGAAGGGATAGTTAGAACGTGGTGTGATAGGTGCGCTTCCCCACCAAAGGTTGACGACGGCGCCAG
AGCGCCGCCGATTGAGATTGAAGATTTGCAATTAGTCTTTGACTTAGAAGACTCATTATTTTTGGATGTGGAAGCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis