Browse Element(s) Details


Os.40563.1.S1_x_at

Description gb:NM_193994.1
DB_XREF= gi:34915071
GEN=P0514H03.10
TID=Os.40563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40563 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ribosomal protein S4 (P0514H03.10), mRNA.
PROD=putative ribosomal protein S4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2561011/1140S ribosomal protein S4, putative, expressed
LOC_Os05g305301/1140S ribosomal protein S4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25569NANA1+14470751..14472417NA
LOC_Os01g25580NANA1+14473814..14479783retrotransposon protein, putative, unclassified
LOC_Os01g25590NANA1+14480419..14483559retrotransposon protein, putative, unclassified
LOC_Os01g25600Os.26854.1.S1_at11/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25600Os.38130.1.S1_at10/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25610Os.40563.1.S1_x_at11/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25610Os.8466.1.S1_at9/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25630OsAffx.23393.1.S1_at11/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.2.S1_x_at3/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.1.S2_at2/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25640Os.47130.4.A1_x_at4/111+14516633..14516956retrotransposon protein, putative, unclassified
LOC_Os01g25650NANA1+14518061..14525452retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40563.1.S1_x_at--893--7871Chr01:14496761..14496785 (25 bp)
GGTTATCTCTATCCTGATGCAGCGG
LOC_Os01g25610
Os.40563.1.S1_x_at--16--1391Chr01:14496820..14496843 (24 bp)
AGACCTACCCTGCTGGTTTCATGGA
LOC_Os01g25610
Os.40563.1.S1_x_at--33--8011Chr01:14496949..14496972 (24 bp)
GGATGTGATTTCCATTCCAAAGACT
LOC_Os01g25610
Os.40563.1.S1_x_at--264--10592Chr05:17613534..17613553 (20 bp)
TTCTCTATGACACCAAGGGTCGCTT
LOC_Os05g30530
Os.40563.1.S1_x_at--1061--2871Chr01:14497183..14497207 (25 bp)
AAGGGCATTCCCTATCTGAACACCT
LOC_Os01g25610
Os.40563.1.S1_x_at--625--8971Chr01:14497199..14497223 (25 bp)
TGAACACCTATGATGGACGCACCAT
LOC_Os01g25610
Os.40563.1.S1_x_at--920--1071Chr01:14497388..14497412 (25 bp)
AGGGCAGTTTTGAGACCATCCATGT
LOC_Os01g25610
Os.40563.1.S1_x_at--955--571Chr01:14497405..14497429 (25 bp)
ATCCATGTGGAGGACGCATTGGGCC
LOC_Os01g25610
Os.40563.1.S1_x_at--989--1071Chr01:14497472..14497496 (25 bp)
AGGGCAACAAGCCATGGGTGTCTCT
LOC_Os01g25610
Os.40563.1.S1_x_at--250--811Chr01:14497485..14497509 (25 bp)
ATGGGTGTCTCTCCCTAAGGGCAAG
LOC_Os01g25610
Os.40563.1.S1_x_at--407--8231Chr01:14497504..14497528 (25 bp)
GGCAAGGGTATCAAGCTCAGCATCA
LOC_Os01g25610
Target Sequence 
GGTTATCTCTATCCTGATGCAGCGGCATGTCTTGGTTGATGGGAAGGTCAGGACTGACAAGACCTACCCTGCTGGTTTCA
TGGATGTGATTTCCATTCCAAAGACTGGTGAGAACTACAGGCTTCTCTATGACACCAAGGGTCGCTTCCGCCTTCAGTCC
GTCAAGGATGAGGATGCCAAGTTTGGACAGAAGGGCATTCCCTATCTGAACACCTATGATGGACGCACCATCCGCTACCC
GGACCCTTTGATTAAGGCTAACGACACAATCAAGATTGATCTTGAGACCAACAAGATTGTTGACTTCATCAAGTTTGATG
TGGGCAATGTCGTTATGGTCACAGGAGGGAGGAACACTGGTCGTGTTGGAGTAATTAAGAACAGGGAGAAGCACAAGGGC
AGTTTTGAGACCATCCATGTGGAGGACGCATTGGGCCATGCCTTCGCCACCCGTCTGGGCAATGTGTTCACCATCGGCAA
GGGCAACAAGCCATGGGTGTCTCTCCCTAAGGGCAAGGGTATCAAGCTCAGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40563.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis