Browse Element(s) Details


Os.8466.1.S1_at

Description gb:AK061826.1
DB_XREF= gi:32971844
TID=Os.8466.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C06, full insert sequence.
FL= gb:AK061826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g256109/1140S ribosomal protein S4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25569NANA1+14470751..14472417NA
LOC_Os01g25580NANA1+14473814..14479783retrotransposon protein, putative, unclassified
LOC_Os01g25590NANA1+14480419..14483559retrotransposon protein, putative, unclassified
LOC_Os01g25600Os.26854.1.S1_at11/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25600Os.38130.1.S1_at10/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25610Os.40563.1.S1_x_at11/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25610Os.8466.1.S1_at9/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25630OsAffx.23393.1.S1_at11/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.2.S1_x_at3/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.1.S2_at2/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25640Os.47130.4.A1_x_at4/111+14516633..14516956retrotransposon protein, putative, unclassified
LOC_Os01g25650NANA1+14518061..14525452retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8466.1.S1_at--853--7671Chr01:14497616..14497640 (25 bp)
GGGTTGACAGAATTTTCCATCCTAG
LOC_Os01g25610
Os.8466.1.S1_at--592--1951Chr01:14497694..14497718 (25 bp)
ACTGTTATTTCATGTTATCGAGCCA
LOC_Os01g25610
Os.8466.1.S1_at--2--751Chr01:14497705..14497729 (25 bp)
ATGTTATCGAGCCATTTTATTGTGT
LOC_Os01g25610
Os.8466.1.S1_at--1046--5491Chr01:14497794..14497818 (25 bp)
GAACAGTAGCAATTAGCCATCACTT
LOC_Os01g25610
Os.8466.1.S1_at--582--9991Chr01:14497807..14497831 (25 bp)
TAGCCATCACTTGTTTAGAGCGAGA
LOC_Os01g25610
Os.8466.1.S1_at--1084--5871Chr01:14497824..14497848 (25 bp)
GAGCGAGATTTGTTTTCAGGCAACT
LOC_Os01g25610
Os.8466.1.S1_at--198--3491Chr01:14497840..14497864 (25 bp)
CAGGCAACTGCTGCTTTACTGAAGC
LOC_Os01g25610
Os.8466.1.S1_at--1114--4751Chr01:14497849..14497873 (25 bp)
GCTGCTTTACTGAAGCTACATGGCT
LOC_Os01g25610
Os.8466.1.S1_at--229--4851Chr01:14497863..14497887 (25 bp)
GCTACATGGCTAATCTTGGTTTATT
LOC_Os01g25610
Os.8466.1.S1_at--199--2591Chr01:14497890..14497914 (25 bp)
AACGAGACTATTGGCATCCTTCCAG
NONE
Os.8466.1.S1_at--1046--5691Chr01:14497895..14497919 (25 bp)
GACTATTGGCATCCTTCCAGCTTGG
NONE
Target Sequence 
GGGTTGACAGAATTTTCCATCCTAGTTGAAATGTAGTTCACAGTAATACTGTTAAGTTGCAGAGATGCATCCTTTTCTAC
TGTTATTTCATGTTATCGAGCCATTTTATTGTGTTCATCTTTTGGCCTTGAAGCTACCAAAATGGCTGAGACCGTTATCA
TCATGCAGTCATTATAATGAACAGTAGCAATTAGCCATCACTTGTTTAGAGCGAGATTTGTTTTCAGGCAACTGCTGCTT
TACTGAAGCTACATGGCTAATCTTGGTTTATTCAAACGAGACTATTGGCATCCTTCCAGCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis