Browse Element(s) Details


Os.38130.1.S1_at

Description gb:CB621387
DB_XREF= gi:29616375
DB_XREF=OSIIEa07D18.r
CLONE=OSIIEa07D18
TID=Os.38130.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0514H03.9 (P0514H03.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2560010/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25550NANA1+14466808..14467011hypothetical protein
LOC_Os01g25560Os.10667.1.S1_at11/111+14468875..14469639rapid alkalinization factor, putative, expressed
LOC_Os01g25569NANA1+14470751..14472417NA
LOC_Os01g25580NANA1+14473814..14479783retrotransposon protein, putative, unclassified
LOC_Os01g25590NANA1+14480419..14483559retrotransposon protein, putative, unclassified
LOC_Os01g25600Os.26854.1.S1_at11/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25600Os.38130.1.S1_at10/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25610Os.40563.1.S1_x_at11/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25610Os.8466.1.S1_at9/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25630OsAffx.23393.1.S1_at11/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.2.S1_x_at3/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.1.S2_at2/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25640Os.47130.4.A1_x_at4/111+14516633..14516956retrotransposon protein, putative, unclassified
LOC_Os01g25650NANA1+14518061..14525452retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38130.1.S1_at--438--10111NONE
TATGGTCACCTCTACAATGTTCAAA
NONE
Os.38130.1.S1_at--544--7451Chr01:14490855..14490879 (25 bp)
GTGTCACCCATTTCTGCTAATAGTT
LOC_Os01g25600
Os.38130.1.S1_at--508--3971Chr01:14490761..14490785 (25 bp)
CGGTTTCACTACTTGCATGCCATTA
LOC_Os01g25600
Os.38130.1.S1_at--767--8671Chr01:14490721..14490745 (25 bp)
TGTGTTGTTCCACAATGCTTTGCCT
LOC_Os01g25600
Os.38130.1.S1_at--159--9191Chr01:14490701..14490725 (25 bp)
TGCCTCCTTTACCTTCTTAAGTAAG
LOC_Os01g25600
Os.38130.1.S1_at--192--7071Chr01:14490681..14490705 (25 bp)
GTAAGTATCATCCACTCACGTAGAC
LOC_Os01g25600
Os.38130.1.S1_at--21--2911Chr01:14490627..14490651 (25 bp)
AAGGTATTATCCTCTGTCCACATAT
LOC_Os01g25600
Os.38130.1.S1_at--902--7271Chr01:14490612..14490636 (25 bp)
GTCCACATATGCAAGGCCTGTTCTT
LOC_Os01g25600
Os.38130.1.S1_at--1069--6731Chr01:14490593..14490617 (25 bp)
GTTCTTGATTCGCTTTGTCCACAAA
LOC_Os01g25600
Os.38130.1.S1_at--111--9851Chr01:14490566..14490590 (25 bp)
TAAATATTTCATACCCCTGTGCAAA
LOC_Os01g25600
Os.38130.1.S1_at--1093--6891Chr01:14490510..14490534 (25 bp)
GTATCCAACTTTCCAATATGCATGT
LOC_Os01g25600
Target Sequence 
TATGGTCACCTCTACAATGTTCAAAATTTGTGGTCTTCTCTGAAATACTTATCATTATTATTAAAATCTGTGTCACCCAT
TTCTGCTAATAGTTTTTACTGCTCTTTGATAATTTAGCATTACAATGGGCATAGTTACCTGGTAAACAACAAAATTACTT
CCTCGGTTTCACTACTTGCATGCCATTATGTCAACCATTTTTTTGTGTTGTTCCACAATGCTTTGCCTCCTTTACCTTCT
TAAGTAAGTATCATCCACTCACGTAGACCATATGTTTTAACTTTTGAATGGCCTTCCAAGGTATTATCCTCTGTCCACAT
ATGCAAGGCCTGTTCTTGATTCGCTTTGTCCACAAATGTAAATATTTCATACCCCTGTGCAAAACAAGTATAATGTCCTT
TATACCTCTGATAAGTATCCAACTTTCCAATATGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis