Browse Element(s) Details


Os.26854.1.S1_at

Description gb:AK072081.1
DB_XREF= gi:32982104
TID=Os.26854.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116G03, full insert sequence.
FL= gb:AK072081.1 gb:AK058532.1 gb:AK060388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2560011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25550NANA1+14466808..14467011hypothetical protein
LOC_Os01g25560Os.10667.1.S1_at11/111+14468875..14469639rapid alkalinization factor, putative, expressed
LOC_Os01g25569NANA1+14470751..14472417NA
LOC_Os01g25580NANA1+14473814..14479783retrotransposon protein, putative, unclassified
LOC_Os01g25590NANA1+14480419..14483559retrotransposon protein, putative, unclassified
LOC_Os01g25600Os.26854.1.S1_at11/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25600Os.38130.1.S1_at10/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25610Os.40563.1.S1_x_at11/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25610Os.8466.1.S1_at9/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25630OsAffx.23393.1.S1_at11/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.2.S1_x_at3/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.1.S2_at2/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25640Os.47130.4.A1_x_at4/111+14516633..14516956retrotransposon protein, putative, unclassified
LOC_Os01g25650NANA1+14518061..14525452retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26854.1.S1_at--228--6491Chr01:14489815..14489839 (25 bp)
GATACGTGACCAGCAAGAGTCTGAA
LOC_Os01g25600
Os.26854.1.S1_at--94--1151Chr01:14489798..14489822 (25 bp)
AGTCTGAAGGTGTCACTCCCGGTGA
LOC_Os01g25600
Os.26854.1.S1_at--712--5351Chr01:14489775..14489799 (25 bp)
GAAGATGTCTATATAATCCTCCGAT
LOC_Os01g25600
Os.26854.1.S1_at--338--51Chr01:14489476..14489500 (25 bp)
ATTGCAGGAACTTCCACGACTTGAA
LOC_Os01g25600
Os.26854.1.S1_at--825--6431Chr01:14489398..14489422 (25 bp)
GATCATCCATATGTTTCTCCATTGT
LOC_Os01g25600
Os.26854.1.S1_at--21--671Chr01:14489297..14489321 (25 bp)
ATGAATTCCCAACTTCTGACGTACT
LOC_Os01g25600
Os.26854.1.S1_at--586--9391Chr01:14489283..14489307 (25 bp)
TCTGACGTACTCCACTAGTTACTGT
LOC_Os01g25600
Os.26854.1.S1_at--954--6771Chr01:14489266..14489290 (25 bp)
GTTACTGTGTGACTTCTCGTTTATG
LOC_Os01g25600
Os.26854.1.S1_at--136--6831Chr01:14489248..14489272 (25 bp)
GTTTATGTCACTACTATCAAGCCAC
LOC_Os01g25600
Os.26854.1.S1_at--1129--8771Chr01:14489207..14489231 (25 bp)
TGTTTTGCTCCCATTCTGTCAATTT
LOC_Os01g25600
Os.26854.1.S1_at--854--671Chr01:14489157..14489181 (25 bp)
ATGACAGATATATCTTCCCTGTGTC
LOC_Os01g25600
Target Sequence 
GATACGTGACCAGCAAGAGTCTGAAGGTGTCACTCCCGGTGAAGATGTCTATATAATCCTCCGATTGGATGGTCGTGTCA
GAAGATCTGGAAGAGGCATGCCAAATTGGAACGACATATTGCAGGAACTTCCACGACTTGAAGAACTGCTGAGCAAACTT
GAACGTTGATGAAGGTGTGTATACAACTGCAGTTTGATCATCCATATGTTTCTCCATTGTATTATTAATTCCCTAATCTA
TGTATAGACCATACCAATGTAATTTTGAGGGAAAATTTTGTTTATGCCACTAATATATGAATTCCCAACTTCTGACGTAC
TCCACTAGTTACTGTGTGACTTCTCGTTTATGTCACTACTATCAAGCCACATACCATTTTTTTTCCTGTTTTGCTCCCAT
TCTGTCAATTTGGACTGTAAGAGAAAACATTGCAAAATGACAGATATATCTTCCCTGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis