Browse Element(s) Details


OsAffx.27215.1.S1_at

Description tigr:9633.m03512
TID=OsAffx.27215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3796011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37940NANA5+22166978..22167441transposon protein, putative, unclassified
LOC_Os05g37950Os.18125.1.S1_at10/115+22179862..22183821expressed protein
LOC_Os05g37960OsAffx.27215.1.S1_at11/115+22188572..22190439hypothetical protein
LOC_Os05g37970Os.5299.2.S1_a_at11/115+22193096..22195540universal stress protein family protein, expressed
LOC_Os05g37980OsAffx.15003.1.S1_at11/115+22196702..22200893Partner of SLD five, PSF1 family protein
LOC_Os05g37990OsAffx.27216.1.S1_at10/115+22207223..22208039hypothetical protein
LOC_Os05g37990OsAffx.27216.1.S1_x_at10/115+22207223..22208039hypothetical protein
LOC_Os05g38000Os.49671.1.S1_at11/115+22210337..22214021expressed protein
LOC_Os05g38010NANA5+22214691..22215174Leucine-rich repeat receptor protein kinase EXS precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27215.1.S1_at--1080--9292Chr02:720826..720850 (25 bp)
TCCCTATCCACGGACGACGGGAGAG
NONE
OsAffx.27215.1.S1_at--784--8052Chr06:27672004..27672028 (25 bp)
GGAGAGGAGCGACCGGCGCGTCCTT
NONE
OsAffx.27215.1.S1_at--209--2952Chr06:27670665..27670696 (25 bp)
AAGGCGGCGGATCCGTTGGTCGCCG
NONE
OsAffx.27215.1.S1_at--706--4111Chr05:22190249..22190273 (25 bp)
CCCTCCGTTGGTGTTCGGATTGGAT
LOC_Os05g37960
OsAffx.27215.1.S1_at--96--3811Chr05:22190247..22190271 (25 bp)
CTCCGTTGGTGTTCGGATTGGATCC
LOC_Os05g37960
OsAffx.27215.1.S1_at--47--6611Chr05:22190232..22190256 (25 bp)
GATTGGATCCGTGCGCCGTCTGAGT
LOC_Os05g37960
OsAffx.27215.1.S1_at--916--551Chr05:22190226..22190250 (25 bp)
ATCCGTGCGCCGTCTGAGTGCTTCA
LOC_Os05g37960
OsAffx.27215.1.S1_at--683--9151Chr05:22190221..22190245 (25 bp)
TGCGCCGTCTGAGTGCTTCATGGCT
LOC_Os05g37960
OsAffx.27215.1.S1_at--1100--7171Chr05:22190215..22190239 (25 bp)
GTCTGAGTGCTTCATGGCTCCGGCT
LOC_Os05g37960
OsAffx.27215.1.S1_at--547--8891Chr05:22190212..22190236 (25 bp)
TGAGTGCTTCATGGCTCCGGCTGCG
LOC_Os05g37960
OsAffx.27215.1.S1_at--1002--8811Chr05:22190140..22190164 (25 bp)
TGTTGTGGCGGCGTGGGAGCGTGAC
LOC_Os05g37960
Target Sequence 
TCCCTATCCACGGACGACGGGAGAGGAGCGACCGGCGCGTCCTTCTCTCTCCCTCCCGGCCATCCTTCCTCGCCGGCGAG
AGCGCACGGAGAGGGAAAAAGGCGGCGGATCCGTTGGTCGCCGCCCTCCGTTGGTGTTCGGATTGGATCCGTGCGCCGTC
TGAGTGCTTCATGGCTCCGGCTGCGGTGGCTGCGGCGGAGGCGGGGTCGAAGGTGGCAGGAGGGGGGGGGGATGTTGTGG
CGGCGTGGGAGCGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis