Browse Element(s) Details


OsAffx.2725.1.S1_at

Description tigr:9630.m02260
TID=OsAffx.2725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g251602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25140NANA2+14598923..14601242retrotransposon protein, putative, unclassified
LOC_Os02g25150NANA2+14606239..14606766hypothetical protein
LOC_Os02g25160OsAffx.24415.1.S1_at11/112+14623316..14625380hypothetical protein
LOC_Os02g25160OsAffx.2725.1.S1_at2/112+14623316..14625380hypothetical protein
LOC_Os02g25170NANA2+14627902..14635780retrotransposon protein, putative, unclassified
LOC_Os02g25180Os.45173.1.S1_x_at1/112+14638828..14645653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25190OsAffx.2741.1.S1_at11/112+14650212..14651359hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2725.1.S1_at--718--4371Chr02:14074743..14074767 (25 bp)
CCACACACAGCACGTTTAGTCCTTG
NONE
OsAffx.2725.1.S1_at--1050--3333Chr01:15604941..15605117 (25 bp)
CACGTTTAGTCCTTGCTAGTTTAGC
NONE
OsAffx.2725.1.S1_at--631--11Chr02:14074718..14074742 (25 bp)
CTAGTTTAGCAAGAGTTGAACCAAC
NONE
OsAffx.2725.1.S1_at--337--6633Chr05:13253914..13253935 (22 bp)
GTTGAACCAACTTATAAGGGCTTGT
NONE
OsAffx.2725.1.S1_at--838--10338Chr12:6862128..6862152 (25 bp)
TTATAAGGGCTTGTCCCTCCAACCA
NONE
OsAffx.2725.1.S1_at--800--91311Chr04:5482232..5482256 (25 bp)
TCCAACCATATCACTCCCGGGTTAA
NONE
OsAffx.2725.1.S1_at--509--10431Chr02:14074655..14074679 (25 bp)
TTAACCCTTTTACACCAAGCGAGCA
NONE
OsAffx.2725.1.S1_at--1042--10331Chr02:14074648..14074671 (24 bp)
TTTACACCAAGCGAGCACAAAAGTG
NONE
OsAffx.2725.1.S1_at--415--4591Chr02:14073588..14073612 (25 bp)
GCGAAGGCGACTACGGTGGCGGCTA
NONE
OsAffx.2725.1.S1_at--181--4152Chr05:29297820..29297844 (25 bp)
CGCGTGGCATTGTTGGGTGCAGCAA
NONE
OsAffx.2725.1.S1_at--988--7291Chr02:14073373..14073397 (25 bp)
GTGCGCGAGCACATCGGAAGCGGTG
NONE
Target Sequence 
CCACACACAGCACGTTTAGTCCTTGCTAGTTTAGCAAGAGTTGAACCAACTTATAAGGGCTTGTCCCTCCAACCATATCA
CTCCCGGGTTAACCCTTTTACACCAAGCGAGCACAAAAGTGTGCACGAGGGCGGGCGGCGGACGGCGGCGTCGCGGCGAC
GGCCGAGCGAAGGCGACTACGGTGGCGGCTACGGGCGCGACGCATGGGGGCGGGCGGTGGACGTGCCCGTGGTGCCTGTG
GTGCTCGTGGAGCTGGAGCTCCCTGCTCCCCTGCAGCAGGTCGGACAGCAGGGGCGCCACGAAGCCGCCGCGGCAGCGCG
GGCGCGTGGCATTGTTGGGTGCAGCAAGCAGGGCGGCGCGCGCGGTGTCCCGGGCGAGAAGGTGCGCGAGCACATCGGAA
GCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis