Browse Element(s) Details


OsAffx.2741.1.S1_at

Description tigr:9630.m02356
TID=OsAffx.2741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2519011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25160OsAffx.24415.1.S1_at11/112+14623316..14625380hypothetical protein
LOC_Os02g25160OsAffx.2725.1.S1_at2/112+14623316..14625380hypothetical protein
LOC_Os02g25170NANA2+14627902..14635780retrotransposon protein, putative, unclassified
LOC_Os02g25180Os.45173.1.S1_x_at1/112+14638828..14645653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25190OsAffx.2741.1.S1_at11/112+14650212..14651359hypothetical protein
LOC_Os02g25200OsAffx.24416.1.S1_x_at11/112+14652906..14653725expressed protein
LOC_Os02g25200OsAffx.24416.1.S1_at11/112+14652906..14653725expressed protein
LOC_Os02g25210OsAffx.19946.1.S1_at11/112+14655721..14656800hypothetical protein
LOC_Os02g25220OsAffx.12186.1.S1_at11/112+14659161..14662082hypothetical protein
LOC_Os02g25230Os.50613.1.S1_at11/112+14675186..14678936calcium channel isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2741.1.S1_at--843--2711Chr02:14651292..14651316 (25 bp)
AAGCATCAATGGGTAGGCCCCGTCC
LOC_Os02g25190
OsAffx.2741.1.S1_at--913--4191Chr02:14651274..14651298 (25 bp)
CCCGTCCAAGGAGTGCACCTGGAAA
LOC_Os02g25190
OsAffx.2741.1.S1_at--1036--8131Chr02:14651254..14651278 (25 bp)
GGAAAGCTAGGTGCGCAGGCTAAAA
LOC_Os02g25190
OsAffx.2741.1.S1_at--980--2411Chr02:14651232..14651256 (25 bp)
AAAAGCCTATGACACCGGCTGCGAA
LOC_Os02g25190
OsAffx.2741.1.S1_at--377--2431Chr02:14650486..14650508 (23 bp)
AAAAGAGACGGATCACTCGCCTATT
LOC_Os02g25190
OsAffx.2741.1.S1_at--1110--7952Chr02:14650477..14650501 (25 bp)
GGATCACTCGCCTATTCAAGAAGGG
LOC_Os02g25190
OsAffx.2741.1.S1_at--875--5312Chr02:14650458..14650482 (25 bp)
GAAGGGATCAAGCTCTCAATCAAGC
LOC_Os02g25190
OsAffx.2741.1.S1_at--931--6051Chr02:14650421..14650445 (25 bp)
GAGTTGAGTACACATTCATCCGTCA
LOC_Os02g25190
OsAffx.2741.1.S1_at--767--8131Chr02:14650377..14650401 (25 bp)
GGACATTCCACCAAGACTTTTTAGC
LOC_Os02g25190
OsAffx.2741.1.S1_at--940--3211Chr02:14650366..14650390 (25 bp)
CAAGACTTTTTAGCGACTCCGATCT
LOC_Os02g25190
OsAffx.2741.1.S1_at--1150--5791Chr02:14650265..14650289 (25 bp)
GACCCTAAACTGCTTCGAAAGATAG
LOC_Os02g25190
Target Sequence 
AAGCATCAATGGGTAGGCCCCGTCCAAGGAGTGCACCTGGAAAGCTAGGTGCGCAGGCTAAAAAGCCTATGACACCGGCT
GCGAAGAAGCCGCAGGCCACACCTAAGACAAAAAAGAGACGGATCACTCGCCTATTCAAGAAGGGATCAAGCTCTCAATC
AAGCTGTCACCAAGATGAGTTGAGTACACATTCATCCGTCAATGTTTTGATGGAGGATGCGGACATTCCACCAAGACTTT
TTAGCGACTCCGATCTCGATCTCGTGGGTGACCGAGAGATGCAAGCCTACCATATGCTCAAGGATAGGTTGTTTGCTCAC
ATCCGAGCATACGACCCTAAACTGCTTCGAAAGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis