Browse Element(s) Details


OsAffx.12186.1.S1_at

Description tigr:9630.m02359
TID=OsAffx.12186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2522011/11hypothetical protein
LOC_Os04g194301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25170NANA2+14627902..14635780retrotransposon protein, putative, unclassified
LOC_Os02g25180Os.45173.1.S1_x_at1/112+14638828..14645653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g25190OsAffx.2741.1.S1_at11/112+14650212..14651359hypothetical protein
LOC_Os02g25200OsAffx.24416.1.S1_x_at11/112+14652906..14653725expressed protein
LOC_Os02g25200OsAffx.24416.1.S1_at11/112+14652906..14653725expressed protein
LOC_Os02g25210OsAffx.19946.1.S1_at11/112+14655721..14656800hypothetical protein
LOC_Os02g25220OsAffx.12186.1.S1_at11/112+14659161..14662082hypothetical protein
LOC_Os02g25230Os.50613.1.S1_at11/112+14675186..14678936calcium channel isoform, putative, expressed
LOC_Os02g25240OsAffx.12187.1.S1_at11/112+14679575..14679787hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12186.1.S1_at--727--313Chr09:9907670..9907691 (22 bp)
ATACCCCTTCGCCAGAGATTGAACA
NONE
OsAffx.12186.1.S1_at--10--9531Chr02:14659557..14659581 (25 bp)
TCTCTTCCCTGCTAATGAGTCTGGG
LOC_Os02g25220
OsAffx.12186.1.S1_at--482--932Chr04:10802501..10802521 (21 bp)
AGGAAAATCCACTCGGGATCCACCG
LOC_Os04g19430
OsAffx.12186.1.S1_at--882--7971Chr02:14659458..14659482 (25 bp)
GGATCCACCGTATTCTAACATTGCA
LOC_Os02g25220
OsAffx.12186.1.S1_at--373--6211Chr02:14659412..14659436 (25 bp)
GAGGCATTCCCATCTAACACTATTA
LOC_Os02g25220
OsAffx.12186.1.S1_at--254--6551Chr02:14659346..14659370 (25 bp)
GATTATTGCGACACCAACTTGCTAC
LOC_Os02g25220
OsAffx.12186.1.S1_at--973--2511Chr02:14659331..14659355 (25 bp)
AACTTGCTACCATTCGCTCATTTTG
LOC_Os02g25220
OsAffx.12186.1.S1_at--1081--6351Chr02:14659290..14659314 (25 bp)
GATCCATGTTAAGGTACCACTCTTG
LOC_Os02g25220
OsAffx.12186.1.S1_at--419--7851Chr02:14659278..14659302 (25 bp)
GGTACCACTCTTGGATGCGATGCAA
LOC_Os02g25220
OsAffx.12186.1.S1_at--913--8751Chr02:14659246..14659270 (25 bp)
TGTACGCTCACTACCTCAAGGATAT
LOC_Os02g25220
OsAffx.12186.1.S1_at--369--6231Chr02:14659209..14659233 (25 bp)
GAGGCCACTGCCGAACACGGAGATG
LOC_Os02g25220
Target Sequence 
ATACCCCTTCGCCAGAGATTGAACACTGATGCAGCCCCGCGTCAGCTGAGTTTTAATAAAATGCTAGAAACCCAGCTGGG
GCAATTAGCTGCTCTCTTCCCTGCTAATGAGTCTGGGAGGATTCTGGGGCAACCCAAACCCTCTCTAGAAAATGTGAAGG
CGATCACTACGAGGGGAGGAAAATCCACTCGGGATCCACCGTATTCTAACATTGCAGGAACAAGGAGGAATGACAAGGAG
GCATTCCCATCTAACACTATTAGGAATAAGAAAACTGCCCAACAAGAAAAGGTAGCACCGCAAGATTATTGCGACACCAA
CTTGCTACCATTCGCTCATTTTGTTGAAACAATTCAGAAGATCCATGTTAAGGTACCACTCTTGGATGCGATGCAAGTAC
CCATGTACGCTCACTACCTCAAGGATATTCTAAGCAACAAGAGGCCACTGCCGAACACGGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis