Browse Element(s) Details


OsAffx.27315.1.S1_at

Description tigr:9633.m04232
TID=OsAffx.27315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4523011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45200Os.57078.1.S1_at11/115+26152346..26153859UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45210Os.47765.1.S1_at10/115+26154233..26162628respiratory burst oxidase homolog, putative, expressed
LOC_Os05g45220Os.51511.1.S1_at11/115+26166316..2616808950S ribosomal protein L20, putative, expressed
LOC_Os05g45230OsAffx.27315.1.S1_at11/115+26173688..26174546hypothetical protein
LOC_Os05g45240NANA5+26178012..26180497flavin monoxygenase-like protein floozy, putative
LOC_Os05g45250NANA5+26184282..26185055transposon protein, putative, unclassified
LOC_Os05g45260OsAffx.27317.1.S1_at11/115+26190033..26191248hypothetical protein
LOC_Os05g45270Os.53442.1.S1_at10/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45270OsAffx.4622.1.S1_at1/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45280Os.5747.1.S1_at9/115+26196261..26199588membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27315.1.S1_at--189--1511Chr05:26174488..26174512 (25 bp)
AGCACGGGCGCCTGCTGATTCCTCA
LOC_Os05g45230
OsAffx.27315.1.S1_at--781--1491Chr05:26174285..26174309 (25 bp)
AGCACCGTCACGAGCAGTGGCGTTA
LOC_Os05g45230
OsAffx.27315.1.S1_at--428--4231Chr05:26174281..26174305 (25 bp)
CCGTCACGAGCAGTGGCGTTACGGA
LOC_Os05g45230
OsAffx.27315.1.S1_at--114--971Chr05:26174186..26174210 (25 bp)
AGGACGCCGAGGTTCGCGTTCCACA
LOC_Os05g45230
OsAffx.27315.1.S1_at--198--3351Chr05:26174163..26174187 (25 bp)
CACGAGGAGCGAGAACGACATCCTC
LOC_Os05g45230
OsAffx.27315.1.S1_at--114--9731Chr05:26174101..26174122 (22 bp)
TCAAGAACAGCGACTTCCCCAGCGA
LOC_Os05g45230
OsAffx.27315.1.S1_at--552--1871Chr05:26173758..26173782 (25 bp)
ACGAGCTCCTTCTCTTCTCTGACGT
LOC_Os05g45230
OsAffx.27315.1.S1_at--1086--10571Chr05:26173749..26173773 (25 bp)
TTCTCTTCTCTGACGTCGACAACAC
LOC_Os05g45230
OsAffx.27315.1.S1_at--255--9471Chr05:26173741..26173765 (25 bp)
TCTGACGTCGACAACACCCAAACTG
LOC_Os05g45230
OsAffx.27315.1.S1_at--20--5631Chr05:26173732..26173756 (25 bp)
GACAACACCCAAACTGCAACAGAGA
LOC_Os05g45230
OsAffx.27315.1.S1_at--1048--1971Chr05:26173720..26173744 (25 bp)
ACTGCAACAGAGAACCTGCGTTTTA
LOC_Os05g45230
Target Sequence 
AGCACGGGCGCCTGCTGATTCCTCAGCTGCCGGCCGCCTACCTCGCGTCGTCGTCGATGGCGGCGCTTAGCCCTGCGGGG
GACGACTGGGCGGCGTCGCTGATCCTCCCAGATGGGGGGTCGGCGGCGGCGGGCGTGGGCGAGGATGATCTTGGCGGAGG
AGTGATGGCGGCGGCGGCGGCGGAAAGCAGCTGCGGAGGGAGCAGCACCGTCACGAGCAGTGGCGTTACGGAGGCGGCGG
CGGCGGCGGCGACGACCACGCGGCGTGGGAGGGGCAACGGGAAGAAGGCGGGCGGCGGCGGGAGGACGCCGAGGTTCGCG
TTCCACACGAGGAGCGAGAACGACATCCTCGACGACGGCTACCGGTGGAGGAAGTACGGGCAGAAGGCCGTCAAGAACAG
CGACTTCCCCAGCGACGACGAGCTCCTTCTCTTCTCTGACGTCGACAACACCCAAACTGCAACAGAGAACCTGCGTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis