Browse Element(s) Details


OsAffx.27383.1.S1_at

Description tigr:9633.m04644
TID=OsAffx.27383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4951011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49490Os.54816.1.S1_at6/115+28293453..28295669hypothetical protein
LOC_Os05g49500OsAffx.15167.1.S1_at10/115+28301306..28303614hypothetical protein
LOC_Os05g49500Os.54816.1.S1_at3/115+28301306..28303614hypothetical protein
LOC_Os05g49510OsAffx.27383.1.S1_at11/115+28305649..28306860hypothetical protein
LOC_Os05g49520OsAffx.15166.1.S1_at11/115+28308917..28314652CTP synthase family protein
LOC_Os05g49530OsAffx.27384.1.S1_at11/115+28317436..28318558F-box domain containing protein
LOC_Os05g49540OsAffx.19542.3.S1_x_at6/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49540OsAffx.9949.1.S1_at1/115+28320418..28333928retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27383.1.S1_at--1090--8051Chr05:28306168..28306192 (25 bp)
GGAGAATCTACTGGCGTGGATCCCA
LOC_Os05g49510
OsAffx.27383.1.S1_at--72--5171Chr05:28306085..28306109 (25 bp)
GCAAGCCCAGGATCTACAACGAACT
LOC_Os05g49510
OsAffx.27383.1.S1_at--393--1851Chr05:28306067..28306091 (25 bp)
ACGAACTGGCCGTTCAGTCACGGTA
LOC_Os05g49510
OsAffx.27383.1.S1_at--385--2551Chr05:28306026..28306050 (25 bp)
AACTGCCTACTGCTGATCGTGAGAT
LOC_Os05g49510
OsAffx.27383.1.S1_at--606--6471Chr05:28306004..28306028 (25 bp)
GATACAGGGAGGGTCATCCCACTTC
LOC_Os05g49510
OsAffx.27383.1.S1_at--601--1371Chr05:28305892..28305916 (25 bp)
AGAGCTGTTCTCTCTGTTTGGCGAG
LOC_Os05g49510
OsAffx.27383.1.S1_at--1031--1291Chr05:28305869..28305893 (25 bp)
AGATGATCTTCCTTGGGCGAGGCTG
LOC_Os05g49510
OsAffx.27383.1.S1_at--259--9851Chr05:28305834..28305858 (25 bp)
TACAATGTGTCCAACTACCCGGGCT
LOC_Os05g49510
OsAffx.27383.1.S1_at--1057--9951Chr05:28305819..28305843 (25 bp)
TACCCGGGCTTCACAGAAGGCGTAT
LOC_Os05g49510
OsAffx.27383.1.S1_at--4--1871Chr05:28305785..28305809 (25 bp)
ACGACGGGAGCTTCTACCATGCTGA
LOC_Os05g49510
OsAffx.27383.1.S1_at--847--9172Chr02:23461644..23461689 (24 bp)
TGCCGACCAGAAGTACACCTGCAGT
NONE
Target Sequence 
GGAGAATCTACTGGCGTGGATCCCAGAGTACACGGACGAGGGGCGTGGAGTCGAGATGCACGGACCGGAGCACCGCGCCT
GCGGCAAGCCCAGGATCTACAACGAACTGGCCGTTCAGTCACGGTACCTCGTGGAGTCCCAGAACTGCCTACTGCTGATC
GTGAGATACAGGGAGGGTCATCCCACTTCTTCCACCCAAGAACTCAAGATATTCCAGCTGGTGGAGCTTGAGATACCGGA
TGAGAACGGTATTATGATGACACGTTACAATTGGGTAGAGCTGTTCTCTCTGTTTGGCGAGATGATCTTCCTTGGGCGAG
GCTGCTCCAGATCCTACAATGTGTCCAACTACCCGGGCTTCACAGAAGGCGTATACTTCCTGGACGACGGGAGCTTCTAC
CATGCTGACCTCCTGTCCCATGACGCTGCCGACCAGAAGTACACCTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis