Browse Element(s) Details


OsAffx.27589.1.S1_at

Description tigr:9634.m01263
TID=OsAffx.27589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1276011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12710NANA6+6937496..6943387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g12720Os.50255.1.S1_at3/116+6944034..6946819retrotransposon protein, putative, unclassified
LOC_Os06g12720Os.46995.1.S1_x_at1/116+6944034..6946819retrotransposon protein, putative, unclassified
LOC_Os06g12730NANA6+6949488..6950000hypothetical protein
LOC_Os06g12740Os.4810.1.S1_s_at11/116+6952701..6955077expressed protein
LOC_Os06g12750NANA6+6957249..6957590retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g12760OsAffx.27589.1.S1_at11/116+6962553..6962961hypothetical protein
LOC_Os06g12769NANA6+6968787..6969403NA
LOC_Os06g12780Os.24795.1.S1_at11/116+6979037..6985314DegP protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27589.1.S1_at--419--9851Chr06:6962904..6962928 (25 bp)
TACAACATCTTTGGAGCTCATGAGC
LOC_Os06g12760
OsAffx.27589.1.S1_at--39--1591Chr06:6962890..6962914 (25 bp)
AGCTCATGAGCTCCTCATCTTTGGA
LOC_Os06g12760
OsAffx.27589.1.S1_at--541--691Chr06:6962885..6962909 (25 bp)
ATGAGCTCCTCATCTTTGGAGCTGT
LOC_Os06g12760
OsAffx.27589.1.S1_at--393--10851Chr06:6962870..6962894 (25 bp)
TTGGAGCTGTATTGGCATCAAATCT
LOC_Os06g12760
OsAffx.27589.1.S1_at--954--4731Chr06:6962865..6962889 (25 bp)
GCTGTATTGGCATCAAATCTAGATC
LOC_Os06g12760
OsAffx.27589.1.S1_at--857--3291Chr06:6962852..6962876 (25 bp)
CAAATCTAGATCAAAATGAGGGCTT
LOC_Os06g12760
OsAffx.27589.1.S1_at--139--3011Chr06:6962838..6962862 (25 bp)
AATGAGGGCTTGATGACAGAAGCTA
LOC_Os06g12760
OsAffx.27589.1.S1_at--335--5631Chr06:6962634..6962848 (25 bp)
GACAGAAGCTAGGTCCATGGGACAT
LOC_Os06g12760
OsAffx.27589.1.S1_at--1000--1551Chr06:6962628..6962842 (25 bp)
AGCTAGGTCCATGGGACATGGTACA
LOC_Os06g12760
OsAffx.27589.1.S1_at--202--5651Chr06:6962614..6962638 (25 bp)
GACATGGTACAAAGGGCCCCATTCC
LOC_Os06g12760
OsAffx.27589.1.S1_at--645--71Chr06:6962594..6962618 (25 bp)
ATTCCCAAGGGCATCTCTGGAAAGA
LOC_Os06g12760
Target Sequence 
TACAACATCTTTGGAGCTCATGAGCTCCTCATCTTTGGAGCTGTATTGGCATCAAATCTAGATCAAAATGAGGGCTTGAT
GACAGAAGCTAGGTCCATGGGACATGGTACAAAGGGCCCCATTCCCAAGGGCATCTCTGGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis