Browse Element(s) Details


Os.4810.1.S1_s_at

Description gb:AU197258
DB_XREF= gi:14574743
DB_XREF=AU197258
CLONE=E2212
TID=Os.4810.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.4810 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1274011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12690Os.9510.1.S1_s_at11/116+6927366..6931491DCN1-like protein 2, putative, expressed
LOC_Os06g12700OsAffx.15394.1.S1_at11/116+6936046..6936369hypothetical protein
LOC_Os06g12710NANA6+6937496..6943387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g12720Os.50255.1.S1_at3/116+6944034..6946819retrotransposon protein, putative, unclassified
LOC_Os06g12720Os.46995.1.S1_x_at1/116+6944034..6946819retrotransposon protein, putative, unclassified
LOC_Os06g12730NANA6+6949488..6950000hypothetical protein
LOC_Os06g12740Os.4810.1.S1_s_at11/116+6952701..6955077expressed protein
LOC_Os06g12750NANA6+6957249..6957590retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g12760OsAffx.27589.1.S1_at11/116+6962553..6962961hypothetical protein
LOC_Os06g12769NANA6+6968787..6969403NA
LOC_Os06g12780Os.24795.1.S1_at11/116+6979037..6985314DegP protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4810.1.S1_s_at--273--7671Chr06:6952883..6952907 (25 bp)
GGGTTTTAGCCTCAGTCCCTAGCTA
LOC_Os06g12740
Os.4810.1.S1_s_at--1151--4451Chr06:6952875..6952899 (25 bp)
GCCTCAGTCCCTAGCTAAGCTACAG
LOC_Os06g12740
Os.4810.1.S1_s_at--58--4852Chr09:13707175..13707457 (25 bp)
GCTACAGTTAGCTTAGCTACTAGCT
NONE
Os.4810.1.S1_s_at--645--9251Chr06:6952826..6952850 (25 bp)
TCCTCATGCCTCTCTCTCAAAGTGT
LOC_Os06g12740
Os.4810.1.S1_s_at--502--9471Chr06:6952816..6952840 (25 bp)
TCTCTCTCAAAGTGTACGTGTAGTC
LOC_Os06g12740
Os.4810.1.S1_s_at--296--6991Chr06:6952803..6952827 (25 bp)
GTACGTGTAGTCTCGTGTACTATTA
LOC_Os06g12740
Os.4810.1.S1_s_at--464--7011Chr06:6952787..6952811 (25 bp)
GTACTATTATTACCTGTGGGCGCCA
LOC_Os06g12740
Os.4810.1.S1_s_at--855--4251Chr06:6952775..6952799 (25 bp)
CCTGTGGGCGCCAAGGCATGGCAAT
LOC_Os06g12740
Os.4810.1.S1_s_at--1060--8211Chr06:6952756..6952780 (25 bp)
GGCAATGCATGGCAATGGTGTTCAT
LOC_Os06g12740
Os.4810.1.S1_s_at--225--8231Chr06:6952746..6952770 (25 bp)
GGCAATGGTGTTCATTCATGATCAT
LOC_Os06g12740
Os.4810.1.S1_s_at--245--9631Chr06:6952731..6952755 (25 bp)
TCATGATCATATCTCTAGTGTCAAT
LOC_Os06g12740
Target Sequence 
GGGTTTTAGCCTCAGTCCCTAGCTAAGCTACAGTTAGCTTAGCTACTAGCTACCTCTTCCTCATGCCTCTCTCTCAAAGT
GTACGTGTAGTCTCGTGTACTATTATTACCTGTGGGCGCCAAGGCATGGCAATGCATGGCAATGGTGTTCATTCATGATC
ATATCTCTAGTGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4810.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis