Browse Element(s) Details


OsAffx.15394.1.S1_at

Description tigr:9634.m01256
TID=OsAffx.15394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1270011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12660Os.51586.1.S1_at8/116+6914784..6915583expressed protein
LOC_Os06g12660OsAffx.15392.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12660Os.4657.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12669NANA6+6920622..6921359NA
LOC_Os06g12680Os.55422.1.S1_at11/116+6922216..6923998Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12690Os.9510.1.S1_s_at11/116+6927366..6931491DCN1-like protein 2, putative, expressed
LOC_Os06g12700OsAffx.15394.1.S1_at11/116+6936046..6936369hypothetical protein
LOC_Os06g12710NANA6+6937496..6943387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g12720Os.50255.1.S1_at3/116+6944034..6946819retrotransposon protein, putative, unclassified
LOC_Os06g12720Os.46995.1.S1_x_at1/116+6944034..6946819retrotransposon protein, putative, unclassified
LOC_Os06g12730NANA6+6949488..6950000hypothetical protein
LOC_Os06g12740Os.4810.1.S1_s_at11/116+6952701..6955077expressed protein
LOC_Os06g12750NANA6+6957249..6957590retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15394.1.S1_at--1129--1671Chr06:6936282..6936306 (25 bp)
AGCCTCTCGGACACCATAGTGGACA
LOC_Os06g12700
OsAffx.15394.1.S1_at--1065--271Chr06:6936267..6936291 (25 bp)
ATAGTGGACAAGGTGACGCATCTCT
LOC_Os06g12700
OsAffx.15394.1.S1_at--394--7371Chr06:6936255..6936279 (25 bp)
GTGACGCATCTCTTGGAGGTGTCTA
LOC_Os06g12700
OsAffx.15394.1.S1_at--855--4971Chr06:6936250..6936274 (25 bp)
GCATCTCTTGGAGGTGTCTAAGGGA
LOC_Os06g12700
OsAffx.15394.1.S1_at--989--3651Chr06:6936156..6936180 (25 bp)
CTTCACGCTTGCCTAGCCACGGATA
LOC_Os06g12700
OsAffx.15394.1.S1_at--535--4911Chr06:6936150..6936174 (25 bp)
GCTTGCCTAGCCACGGATACGGAAC
LOC_Os06g12700
OsAffx.15394.1.S1_at--761--1911Chr06:6936138..6936162 (25 bp)
ACGGATACGGAACGTGACATCACGG
LOC_Os06g12700
OsAffx.15394.1.S1_at--249--391Chr06:6936120..6936144 (25 bp)
ATCACGGATCATCACCGGCTACCAT
LOC_Os06g12700
OsAffx.15394.1.S1_at--829--4851Chr06:6936103..6936127 (25 bp)
GCTACCATTGCCCATTGCCGTGGTG
LOC_Os06g12700
OsAffx.15394.1.S1_at--941--71Chr06:6936090..6936114 (25 bp)
ATTGCCGTGGTGTCCTTCAACGACC
LOC_Os06g12700
OsAffx.15394.1.S1_at--760--8691Chr06:6936080..6936104 (25 bp)
TGTCCTTCAACGACCCGAACATCGA
LOC_Os06g12700
Target Sequence 
AGCCTCTCGGACACCATAGTGGACAAGGTGACGCATCTCTTGGAGGTGTCTAAGGGAGAGGAGCTGAGCATCAAGGTGGT
GGGACACAACCTCGGCGCCTTGCTCGCTGTCCTCGCCGCCAACGAGCTTCACGCTTGCCTAGCCACGGATACGGAACGTG
ACATCACGGATCATCACCGGCTACCATTGCCCATTGCCGTGGTGTCCTTCAACGACCCGAACATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis