Browse Element(s) Details


Os.4657.1.S1_at

Description gb:AK108304.1
DB_XREF= gi:32993513
TID=Os.4657.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F04, full insert sequence.
FL= gb:AK108304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5094011/11F-box family protein, putative, expressed
LOC_Os06g126601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50910Os.49492.1.S1_at10/112+31114780..31118150chromosome-associated kinesin, putative, expressed
LOC_Os02g50919NANA2+31131901..31132058NA
LOC_Os02g50930OsAffx.24820.1.S1_at11/112+31135212..31136527Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g50940Os.4657.1.S1_at11/112+31139411..31140268F-box family protein, putative, expressed
LOC_Os02g50950OsAffx.3032.1.S1_at9/112+31144469..31145991hypothetical protein
LOC_Os02g50960Os.2230.1.S1_at11/112+31153034..31156129Auxin efflux carrier component 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4657.1.S1_at--110--8512Chr06:6915045..6915068 (24 bp)
TGGAAGACCTTCATCCGGCGGTTCG
LOC_Os06g12660
Os.4657.1.S1_at--902--2531Chr02:31139913..31139937 (25 bp)
AACTACGGCCGGAAGCTCAACTACG
LOC_Os02g50940
Os.4657.1.S1_at--395--2211Chr02:31139672..31139696 (25 bp)
ACAATCACTTCACCGGATCAAACGA
LOC_Os02g50940
Os.4657.1.S1_at--122--6451Chr02:31139657..31139681 (25 bp)
GATCAAACGAGAACACGGCGTCCTG
LOC_Os02g50940
Os.4657.1.S1_at--1001--7251Chr02:31139633..31139657 (25 bp)
GTCCTCGATTTGCTTCGGGTTGCAA
LOC_Os02g50940
Os.4657.1.S1_at--21--10771Chr02:31139534..31139558 (25 bp)
TTGAGTTCGTTCGTTACTGTACAAA
LOC_Os02g50940
Os.4657.1.S1_at--264--6531Chr02:31139499..31139523 (25 bp)
GATTTGTTTAATTCGTTCTCTGTCA
LOC_Os02g50940
Os.4657.1.S1_at--1102--6711Chr02:31139485..31139509 (25 bp)
GTTCTCTGTCATCGAATTGTCGCCG
LOC_Os02g50940
Os.4657.1.S1_at--823--3171Chr02:31139471..31139495 (25 bp)
AATTGTCGCCGTGAATTCGTCGATC
LOC_Os02g50940
Os.4657.1.S1_at--699--3151Chr02:31139458..31139482 (25 bp)
AATTCGTCGATCGTGTCGTGCCACA
LOC_Os02g50940
Os.4657.1.S1_at--376--7271Chr02:31139441..31139465 (25 bp)
GTGCCACAGTTTTGTCCCGATTGAA
LOC_Os02g50940
Target Sequence 
TGGAAGACCTTCATCCGGCGGTTCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGCCGCGGCCGCACAACTACGG
CCGGAAGCTCAACTACGACGCGCTCAGCTACGCGCTCAACTTCGACGAGGGCCACGGCGCCAGCCCCGAGGGCGACTACA
CCGGCTACCGCGACTTCTCCGCCCGCTTCGCCGCCCCGCCGGCCTCCGCCAAGTCGTCCATGGACCTCGGCGGCCGCGAC
GCCCCGCCGCTCTTCAACCCGCCGCCGCCCCACGACGGCGCCGGCCGGGCTTGACCTCTCGTTCCTCTCCCCCACAATCA
CTTCACCGGATCAAACGAGAACACGGCGTCCTGTCCTCGATTTGCTTCGGGTTGCAATGTCGTGATTTGGTGAGAAGCGA
GATCGANCGTTGNTTCGGTTCGGTTCCCCTCTCATCTTCTGTTTCCTTCAATTGAGTTCGTTCGTTACTGTACAAAAAAG
AACATAGATTTGTTTAATTCGTTCTCTGTCATCGAATTGTCGCCGTGAATTCGTCGATCGTGTCGTGCCACAGTTTTGTC
CCGATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis