Browse Element(s) Details


OsAffx.3032.1.S1_at

Description tigr:9630.m04995
TID=OsAffx.3032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g509509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50919NANA2+31131901..31132058NA
LOC_Os02g50930OsAffx.24820.1.S1_at11/112+31135212..31136527Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g50940Os.4657.1.S1_at11/112+31139411..31140268F-box family protein, putative, expressed
LOC_Os02g50950OsAffx.3032.1.S1_at9/112+31144469..31145991hypothetical protein
LOC_Os02g50960Os.2230.1.S1_at11/112+31153034..31156129Auxin efflux carrier component 4, putative, expressed
LOC_Os02g50970Os.5102.2.S1_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50970Os.5102.1.S1_x_at11/112+31166104..31174308Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3032.1.S1_at--1074--7151NONE
GTCTCTCACAAGTCGATCCGTTGAT
NONE
OsAffx.3032.1.S1_at--951--3051Chr02:31145625..31145649 (25 bp)
AATCTGCACTGCGAAAGCTCACACT
LOC_Os02g50950
OsAffx.3032.1.S1_at--849--1571Chr02:31145610..31145634 (25 bp)
AGCTCACACTTTCAGATGCATCAAC
LOC_Os02g50950
OsAffx.3032.1.S1_at--909--6311Chr02:31145596..31145620 (25 bp)
GATGCATCAACTGCCGGAGAAAGGA
LOC_Os02g50950
OsAffx.3032.1.S1_at--119--5891NONE
GAGCGATATGCTTTCAACCATTGAA
NONE
OsAffx.3032.1.S1_at--1096--8991Chr02:31144671..31144695 (25 bp)
TGAAGATTCCTGCTTCTCCTACAAA
LOC_Os02g50950
OsAffx.3032.1.S1_at--469--9251Chr02:31144655..31144679 (25 bp)
TCCTACAAACATTCACTACCAGCTT
LOC_Os02g50950
OsAffx.3032.1.S1_at--1077--8231Chr02:31144621..31144645 (25 bp)
GGCAAACTGTCAACCAGTGGATCAT
LOC_Os02g50950
OsAffx.3032.1.S1_at--302--2351Chr02:31144577..31144601 (25 bp)
AAAGCTACTATATCGTGGGCTCAGT
LOC_Os02g50950
OsAffx.3032.1.S1_at--586--5571Chr02:31144546..31144570 (25 bp)
GAAAGATACACATCAACGTTCTGGA
LOC_Os02g50950
OsAffx.3032.1.S1_at--242--2591Chr02:31144532..31144556 (25 bp)
AACGTTCTGGATGGTCTGCATGGAC
LOC_Os02g50950
Target Sequence 
GTCTCTCACAAGTCGATCCGTTGATGTAGATGATAGTGTGATATCAGACGGCAAAAGATTGCAAAATCTGCACTGCGAAA
GCTCACACTTTCAGATGCATCAACTGCCGGAGAAAGGATCGAGAGCGATATGCTTTCAACCATTGAAGATTCCTGCTTCT
CCTACAAACATTCACTACCAGCTTAGATGGAAAGGCAAACTGTCAACCAGTGGATCATGCAAACACAGTGAAACAGAAAA
GCTACTATATCGTGGGCTCAGTAAGTCAGAAAGATACACATCAACGTTCTGGATGGTCTGCATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis