Browse Element(s) Details


Os.5102.1.S1_x_at

Description gb:AK100319.1
DB_XREF= gi:32985528
TID=Os.5102.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079B22, full insert sequence.
FL= gb:AK100319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5097011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50950OsAffx.3032.1.S1_at9/112+31144469..31145991hypothetical protein
LOC_Os02g50960Os.2230.1.S1_at11/112+31153034..31156129Auxin efflux carrier component 4, putative, expressed
LOC_Os02g50970Os.5102.2.S1_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50970Os.5102.1.S1_x_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50980OsAffx.3033.1.S1_x_at11/112+31178954..31179649expressed protein
LOC_Os02g50990Os.7176.2.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.1.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_x_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g51000Os.5807.2.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51000Os.5807.1.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51010OsAffx.12582.1.S1_at11/112+31193145..31193915plant integral membrane protein TIGR01569 containing protein
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0009414biological_processresponse to water deprivation
GO:0009621biological_processresponse to pathogenic fungi
GO:0009723biological_processresponse to ethylene stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5102.1.S1_x_at--887--5251Chr02:31173492..31173516 (25 bp)
GAATCGTCGCCTTGATATTCCAGAT
LOC_Os02g50970
Os.5102.1.S1_x_at--732--8091Chr02:31173683..31173707 (25 bp)
GGACCCAAAATTGCGGCCATCATTT
LOC_Os02g50970
Os.5102.1.S1_x_at--472--211Chr02:31173704..31173728 (25 bp)
ATTTGCAGATATCATGGCCTCATTG
LOC_Os02g50970
Os.5102.1.S1_x_at--596--8431Chr02:31173719..31173743 (25 bp)
GGCCTCATTGAAACCACTGCTGAAA
LOC_Os02g50970
Os.5102.1.S1_x_at--772--2791Chr02:31173800..31173824 (25 bp)
AAGAGGATGTTACCAGCTGCCCGAA
LOC_Os02g50970
Os.5102.1.S1_x_at--191--1111Chr02:31173905..31173929 (25 bp)
AGTGTGCTGGGTATCCATCTGTGAA
LOC_Os02g50970
Os.5102.1.S1_x_at--1133--471Chr02:31173921..31173945 (25 bp)
ATCTGTGAAGACCAGCGCTGCCAAA
LOC_Os02g50970
Os.5102.1.S1_x_at--1141--2271Chr02:31174002..31174026 (25 bp)
AAATGTTTAGCACAGTTCTTCCCCA
LOC_Os02g50970
Os.5102.1.S1_x_at--1113--8351Chr02:31174053..31174077 (25 bp)
GGCGGGCGGAAGTTACACATGCTTT
LOC_Os02g50970
Os.5102.1.S1_x_at--39--2111Chr02:31174069..31174093 (25 bp)
ACATGCTTTTTTCATACCATCTCTC
LOC_Os02g50970
Os.5102.1.S1_x_at--1032--10151Chr02:31174102..31174126 (25 bp)
TATCTCGTGTTCTCCACCAAATGGT
LOC_Os02g50970
Target Sequence 
GAATCGTCGCCTTGATATTCCAGATAACACTGATCCCGCCATTGCAGAAATAATAGCAAAATGCTGGCAGACGGACCCAA
AATTGCGGCCATCATTTGCAGATATCATGGCCTCATTGAAACCACTGCTGAAAAACATGACCGCTCAAGCGCCAAGGCAG
AGAGTACAACAAACCGACGAGTAAGAAAAAAGAGGATGTTACCAGCTGCCCGAAGGCCTAAGTATAGCATTTTTTTTTGT
TTTTTGTATAGTAACACCAATTGTGTGTTCGAGATTGGAAAGCGTGATGATGTTAGTGTGCTGGGTATCCATCTGTGAAG
ACCAGCGCTGCCAAACCCGTCCACGATGGAGGAAAATTGAACAGCGGCAAGAAACTGTGCAAACGCGAATCAAATGTTTA
GCACAGTTCTTCCCCAAAAACACCAGTCTCAGGAAATCACATGGCGGGCGGAAGTTACACATGCTTTTTTCATACCATCT
CTCTTTTCCTTTATCTCGTGTTCTCCACCAAATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5102.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis