Browse Element(s) Details


Os.5807.2.S1_at

Description gb:AK111254.1
DB_XREF= gi:32996463
TID=Os.5807.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-E05, full insert sequence.
FL= gb:AK111254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5100011/11Nuclear movement protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50970Os.5102.2.S1_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50970Os.5102.1.S1_x_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50980OsAffx.3033.1.S1_x_at11/112+31178954..31179649expressed protein
LOC_Os02g50990Os.7176.2.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.1.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_x_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g51000Os.5807.2.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51000Os.5807.1.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51010OsAffx.12582.1.S1_at11/112+31193145..31193915plant integral membrane protein TIGR01569 containing protein
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os02g51040Os.4613.1.S1_at11/112+31214699..31216344Alpha-expansin 15 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5807.2.S1_at--224--5091Chr02:31191129..31191153 (25 bp)
GCACCGTGACCTTCTAATTGTTCAT
LOC_Os02g51000
Os.5807.2.S1_at--507--3151Chr02:31191114..31191138 (25 bp)
AATTGTTCATCGTGTTCGAATGCGA
LOC_Os02g51000
Os.5807.2.S1_at--874--5571Chr02:31191091..31191115 (25 bp)
GAAATGTTTGCGTGCTTCGGTGACC
LOC_Os02g51000
Os.5807.2.S1_at--899--7371Chr02:31191072..31191096 (25 bp)
GTGACCTGTATGCTCTTATTCGATT
LOC_Os02g51000
Os.5807.2.S1_at--1154--10031Chr02:31191046..31191070 (25 bp)
TAGATTGTCATTTCGCCTGTTGATC
LOC_Os02g51000
Os.5807.2.S1_at--877--1491Chr02:31190977..31191001 (25 bp)
AGCAAATGTGCTTTCCCATCTTGTG
LOC_Os02g51000
Os.5807.2.S1_at--779--411Chr02:31190960..31190984 (25 bp)
ATCTTGTGCCAAGCTAGGGCCACTT
LOC_Os02g51000
Os.5807.2.S1_at--842--10071Chr02:31190946..31190970 (25 bp)
TAGGGCCACTTGTCTAGACTTCGAT
LOC_Os02g51000
Os.5807.2.S1_at--428--7151Chr02:31190935..31190959 (25 bp)
GTCTAGACTTCGATCAGTTCTCGAT
LOC_Os02g51000
Os.5807.2.S1_at--1129--1211Chr02:31190920..31190944 (25 bp)
AGTTCTCGATCTGTAGTAGTTCTAT
LOC_Os02g51000
Os.5807.2.S1_at--1058--7511Chr02:31190894..31190918 (25 bp)
GTGGAGCTATAATCCTCAGATTTCG
LOC_Os02g51000
Target Sequence 
GCACCGTGACCTTCTAATTGTTCATCGTGTTCGAATGCGAAATGTTTGCGTGCTTCGGTGACCTGTATGCTCTTATTCGA
TTATAGATTGTCATTTCGCCTGTTGATCTCTACCTCTTATGCGGAATTGGGGCAGATATAGAGTTTGAATCAGCAAATGT
GCTTTCCCATCTTGTGCCAAGCTAGGGCCACTTGTCTAGACTTCGATCAGTTCTCGATCTGTAGTAGTTCTATAGTGGAG
CTATAATCCTCAGATTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5807.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis