Browse Element(s) Details


OsAffx.3033.1.S1_x_at

Description tigr:9630.m04999
TID=OsAffx.3033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AT3g29075MXE2_1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5098011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50960Os.2230.1.S1_at11/112+31153034..31156129Auxin efflux carrier component 4, putative, expressed
LOC_Os02g50970Os.5102.2.S1_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50970Os.5102.1.S1_x_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50980OsAffx.3033.1.S1_x_at11/112+31178954..31179649expressed protein
LOC_Os02g50990Os.7176.2.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.1.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_x_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g51000Os.5807.2.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51000Os.5807.1.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51010OsAffx.12582.1.S1_at11/112+31193145..31193915plant integral membrane protein TIGR01569 containing protein
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3033.1.S1_x_at--1051--1871Chr02:31179033..31179057 (25 bp)
ACGAGGTTGCCGACTTCGACGAGTA
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--100--9291Chr02:31179122..31179146 (25 bp)
TCCGACGAGATATGCCACCCCATCT
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--232--4071Chr02:31179208..31179232 (25 bp)
CGAGGAGACCCACCTCTCGGCTGGC
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--21--8351Chr02:31179269..31179293 (25 bp)
GGCGGCGGGTACAGGAAGCCCAAGC
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--244--4611Chr02:31179489..31179513 (25 bp)
GCGACGAGAGGAAGCCGCGATACAA
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--1014--5411Chr02:31179499..31179523 (25 bp)
GAAGCCGCGATACAAGAAGCACGAC
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--128--4631Chr02:31179505..31179529 (25 bp)
GCGATACAAGAAGCACGACGACGAC
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--939--1931Chr02:31179534..31179558 (25 bp)
ACGGCGAGAGGAAGCCGCGTTACAA
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--640--6191Chr02:31179541..31179565 (25 bp)
GAGGAAGCCGCGTTACAAGAAGCGC
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--1123--4131Chr02:31179549..31179573 (25 bp)
CGCGTTACAAGAAGCGCGACGACGA
LOC_Os02g50980
OsAffx.3033.1.S1_x_at--682--6191Chr02:31179595..31179619 (25 bp)
GAGGAAGCAGCGCTACGAGAAGAAC
LOC_Os02g50980
Target Sequence 
ACGAGGTTGCCGACTTCGACGAGTACGACCCCACCCCGTACGGCGGCGGCTACGACATCGCCCTCACCTTCGGCCGCGCC
CTCCCGCCCTCCGACGAGATATGCCACCCCATCTCCACCGCCTCCTCCTCCTCCTCCTCGTACGACCGCCCCCAGCAAGG
CCGGAGGCCACCTGCCGAGGAGACCCACCTCTCGGCTGGCCACGGCAGGAGGCCGGACGACGACGAGGCGACGCACGGCG
GCGGGTACAGGAAGCCCAAGCCGGCGTACGGGGACGACGAGCAGCAGCGGCGGCACACCTCCGGCGGCGGCCGCAAGAAG
CATGGAGGTGACGACGACGATGGCTCCGGCGACGAGAGGAAGCCGCGATACAAGAAGCACGACGACGACGACGACGGCGA
GAGGAAGCCGCGTTACAAGAAGCGCGACGACGACGACGACGACTCCGACGGCGAGAGGAAGCAGCGCTACGAGAAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3033.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis