Browse Element(s) Details


OsAffx.12582.1.S1_at

Description tigr:9630.m05004
TID=OsAffx.12582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=plant integral membrane protein TIGR01569, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5101011/11plant integral membrane protein TIGR01569 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50970Os.5102.2.S1_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50970Os.5102.1.S1_x_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50980OsAffx.3033.1.S1_x_at11/112+31178954..31179649expressed protein
LOC_Os02g50990Os.7176.2.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.1.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_x_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g51000Os.5807.2.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51000Os.5807.1.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51010OsAffx.12582.1.S1_at11/112+31193145..31193915plant integral membrane protein TIGR01569 containing protein
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os02g51040Os.4613.1.S1_at11/112+31214699..31216344Alpha-expansin 15 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12582.1.S1_at--940--6751Chr02:31193661..31193685 (25 bp)
GTTCAAGGCGCAGTACAGTGACCTC
LOC_Os02g51010
OsAffx.12582.1.S1_at--880--7011Chr02:31193649..31193673 (25 bp)
GTACAGTGACCTCCCGACCTTAACG
LOC_Os02g51010
OsAffx.12582.1.S1_at--436--5791Chr02:31193547..31193658 (25 bp)
GACCTTAACGTTGTTCGTGGTGGCG
LOC_Os02g51010
OsAffx.12582.1.S1_at--266--8451Chr02:31193527..31193551 (25 bp)
TGGCGAATTCGGCTGTTACTGCGTA
LOC_Os02g51010
OsAffx.12582.1.S1_at--844--4731Chr02:31193516..31193540 (25 bp)
GCTGTTACTGCGTACCTGGTGCTGT
LOC_Os02g51010
OsAffx.12582.1.S1_at--313--8711Chr02:31193482..31193506 (25 bp)
TGTCCGTCGTGCACATCATCAGGAG
LOC_Os02g51010
OsAffx.12582.1.S1_at--1051--5111Chr02:31193472..31193496 (25 bp)
GCACATCATCAGGAGCAGGGCAAGT
LOC_Os02g51010
OsAffx.12582.1.S1_at--850--10091Chr02:31193442..31193466 (25 bp)
TAGGCTGGTGTTGATCTTCCTTGAC
LOC_Os02g51010
OsAffx.12582.1.S1_at--945--8811Chr02:31193436..31193458 (23 bp)
TGTTGATCTTCCTTGACTCGGTAAT
LOC_Os02g51010
OsAffx.12582.1.S1_at--1021--10751Chr02:31193344..31193446 (25 bp)
TTGACTCGGTAATGCTGGCGCTGGT
LOC_Os02g51010
OsAffx.12582.1.S1_at--765--3251Chr02:31193268..31193292 (25 bp)
CAACGTGAGGGCCAACTGGTTCGCC
LOC_Os02g51010
Target Sequence 
GTTCAAGGCGCAGTACAGTGACCTCCCGACCTTAACGTTGTTCGTGGTGGCGAATTCGGCTGTTACTGCGTACCTGGTGC
TGTCCATCCCGCTGTCCGTCGTGCACATCATCAGGAGCAGGGCAAGTTACAGTAGGCTGGTGTTGATCTTCCTTGACTCG
GTAATGCTGGCGCTGGTGGCGGCGGTCGCGTCGGCGTCGGCGGCGATCGTGTACCTGGCGCACAAGGGCAACGTGAGGGC
CAACTGGTTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis