Browse Element(s) Details


Os.4613.1.S1_at

Description gb:AF247162.1
DB_XREF= gi:7407658
TID=Os.4613.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4613 (NCBI UniGene Cluster)
DEF=Oryza sativa alpha-expansin OsEXPA5 mRNA, complete cds.
PROD=alpha-expansin OsEXPA5
FL= gb:AK107334.1 gb:AF247162.1 gb:AK073572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5104011/11Alpha-expansin 15 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51000Os.5807.2.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51000Os.5807.1.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51010OsAffx.12582.1.S1_at11/112+31193145..31193915plant integral membrane protein TIGR01569 containing protein
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os02g51040Os.4613.1.S1_at11/112+31214699..31216344Alpha-expansin 15 precursor, putative, expressed
LOC_Os02g51050OsAffx.27250.4.S1_x_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_s_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51060Os.6170.1.S1_at11/112+31222529..31226031glycosyl transferase, group 2 family protein, expressed
LOC_Os02g51070Os.13018.1.S1_a_at11/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51070Os.18301.1.S1_at9/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51080Os.10275.1.S1_at11/112+31240356..31242932Geranylgeranyl hydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005199molecular_functionstructural constituent of cell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4613.1.S1_at--374--2491Chr02:31215837..31215861 (25 bp)
AACTGATTCCGCTCAATTTTACTCG
LOC_Os02g51040
Os.4613.1.S1_at--956--151Chr02:31215852..31215876 (25 bp)
ATTTTACTCGAGCATCGTCGTGGTA
LOC_Os02g51040
Os.4613.1.S1_at--211--6671Chr02:31215877..31215901 (25 bp)
GTTGCAGTAGTACTCCCAACTGGAC
LOC_Os02g51040
Os.4613.1.S1_at--289--1951Chr02:31215895..31215919 (25 bp)
ACTGGACCGTGCTGGGAAGTGCCAT
LOC_Os02g51040
Os.4613.1.S1_at--159--8831Chr02:31215927..31215951 (25 bp)
TGATTGGTACTCAGTCTCGCCTTGG
LOC_Os02g51040
Os.4613.1.S1_at--168--9511Chr02:31215941..31215965 (25 bp)
TCTCGCCTTGGTTCTTGGGAAAGTA
LOC_Os02g51040
Os.4613.1.S1_at--479--7691Chr02:31215972..31215996 (25 bp)
GGGTAGTTTGGCCTAGTATCAACAT
LOC_Os02g51040
Os.4613.1.S1_at--425--8691Chr02:31216003..31216027 (25 bp)
TGTGCTGGTGTCACTGCTAGTGGTA
LOC_Os02g51040
Os.4613.1.S1_at--375--8491Chr02:31216101..31216125 (25 bp)
TGGCTTGATTGACAGAGGCCGCCTT
LOC_Os02g51040
Os.4613.1.S1_at--969--6891Chr02:31216126..31216150 (25 bp)
GTATCACCCGCCAAAATAGCAAAAT
LOC_Os02g51040
Os.4613.1.S1_at--994--10771Chr02:31216196..31216220 (25 bp)
TTGTTGTCTGTACCGGACCCCAGTA
LOC_Os02g51040
Target Sequence 
AACTGATTCCGCTCAATTTTACTCGAGCATCGTCGTGGTAGTTGCAGTAGTACTCCCAACTGGACCGTGCTGGGAAGTGC
CATTGTTTTATGATTGGTACTCAGTCTCGCCTTGGTTCTTGGGAAAGTATTTAGTGGGTAGTTTGGCCTAGTATCAACAT
GGGCTTTGTGCTGGTGTCACTGCTAGTGGTAGTTTGTTACAAGTACCATTAGTTGAGCTTTTGTGGTATCTTTTGGCTAG
GGATTGGAAGTGGTGGTAAGGCTGTGGCTTGATTGACAGAGGCCGCCTTGTATCACCCGCCAAAATAGCAAAATTGGGCC
TAATGGGAATGGCCTTCTGCTAGTAATGGTTTTGCCTGGTTGTTGTCTGTACCGGACCCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis