Browse Element(s) Details


Os.6170.1.S1_at

Description gb:AK058756.1
DB_XREF= gi:32968774
TID=Os.6170.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.6170 (NCBI UniGene Cluster)
UG_TITLE=CSLA6 mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-B01, full insert sequence.
FL= gb:AK058756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5106011/11glycosyl transferase, group 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os02g51040Os.4613.1.S1_at11/112+31214699..31216344Alpha-expansin 15 precursor, putative, expressed
LOC_Os02g51050OsAffx.27250.4.S1_x_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_s_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51060Os.6170.1.S1_at11/112+31222529..31226031glycosyl transferase, group 2 family protein, expressed
LOC_Os02g51070Os.13018.1.S1_a_at11/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51070Os.18301.1.S1_at9/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51080Os.10275.1.S1_at11/112+31240356..31242932Geranylgeranyl hydrogenase, putative, expressed
LOC_Os02g51090OsAffx.12583.1.S1_at11/112+31243291..31244739RWP-RK domain containing protein
LOC_Os02g51100Os.23055.1.A1_at11/112+31246709..31250095anion-transporting ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6170.1.S1_at--603--4491Chr02:31223038..31223152 (25 bp)
GCCGTTTCAAAGACAGGTTCCACTG
LOC_Os02g51060
Os.6170.1.S1_at--476--6691Chr02:31223022..31223046 (25 bp)
GTTCCACTGCCTTGAGCTATTCATT
LOC_Os02g51060
Os.6170.1.S1_at--861--7731Chr02:31222997..31223021 (25 bp)
GGTGGATTTCTTCTTACGTCTGCAT
LOC_Os02g51060
Os.6170.1.S1_at--233--1891Chr02:31222982..31223006 (25 bp)
ACGTCTGCATGCTATGACTACTTGT
LOC_Os02g51060
Os.6170.1.S1_at--348--10371Chr02:31222944..31222968 (25 bp)
TTTTTACATCTTTCTTCTGTCCCAA
LOC_Os02g51060
Os.6170.1.S1_at--523--5211Chr02:31222892..31222916 (25 bp)
GAATTCATGGGCGTCAGTGTCTCCA
LOC_Os02g51060
Os.6170.1.S1_at--340--1111Chr02:31222877..31222901 (25 bp)
AGTGTCTCCAGTTAGATCAAGGCAG
LOC_Os02g51060
Os.6170.1.S1_at--1017--1071Chr02:31222854..31222878 (25 bp)
AGGGCAATTGCAAGATCTGCTCCAG
LOC_Os02g51060
Os.6170.1.S1_at--782--1831Chr02:31222763..31222787 (25 bp)
ACGCTGCGGCAATTGAGGGCTTCAA
LOC_Os02g51060
Os.6170.1.S1_at--214--6091Chr02:31222637..31222661 (25 bp)
GAGTAGCTTCGCATCTTATGTAACT
LOC_Os02g51060
Os.6170.1.S1_at--1133--6951Chr02:31222567..31222591 (25 bp)
GTAGCACGACATTTAACACCTATGA
LOC_Os02g51060
Target Sequence 
GCCGTTTCAAAGACAGGTTCCACTGCCTTGAGCTATTCATTGGTGGATTTCTTCTTACGTCTGCATGCTATGACTACTTG
TACAGAGATGATATTTTTTACATCTTTCTTCTGTCCCAATCGATCATATATTTTGCAATTGGATTTGAATTCATGGGCGT
CAGTGTCTCCAGTTAGATCAAGGCAGGGCAATTGCAAGATCTGCTCCAGAAGCAGGATCCATGTTAAAGCAGTCAATGGG
GAACTCTTGTGCCTTGCATGTGACAGGAAAGCTCAACGCTGCGGCAATTGAGGGCTTCAACAAATTGCGATAAGCATATG
GGAGATAAGAACACATTGAGCAAGAAGAAAATCATCTAGTATTGTCAACGTATTTAATAGGCAAGTGCTATCTTTAGTGA
AGAGTAGCTTCGCATCTTATGTAACTTAGCATGTTAATAGTGACAATTATCATTTCAGAGCTACAGATATTGTAGCACGA
CATTTAACACCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis