Browse Element(s) Details


Os.23055.1.A1_at

Description gb:AK099676.1
DB_XREF= gi:32984885
TID=Os.23055.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070D05, full insert sequence.
FL= gb:AK099676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5110011/11anion-transporting ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51060Os.6170.1.S1_at11/112+31222529..31226031glycosyl transferase, group 2 family protein, expressed
LOC_Os02g51070Os.13018.1.S1_a_at11/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51070Os.18301.1.S1_at9/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51080Os.10275.1.S1_at11/112+31240356..31242932Geranylgeranyl hydrogenase, putative, expressed
LOC_Os02g51090OsAffx.12583.1.S1_at11/112+31243291..31244739RWP-RK domain containing protein
LOC_Os02g51100Os.23055.1.A1_at11/112+31246709..31250095anion-transporting ATPase family protein, putative, expressed
LOC_Os02g51110Os.7164.1.S1_at11/112+31260459..31264070MIP family channel proteins containing protein, expressed
LOC_Os02g51120OsAffx.3034.1.S1_at11/112+31274715..31277298NAC-domain containing protein 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0016020cellular_componentmembrane
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23055.1.A1_at--545--4751Chr02:31247267..31247291 (25 bp)
GCTGAACTTAATCCAAGCACCTCTT
LOC_Os02g51100
Os.23055.1.A1_at--67--2731Chr02:31247253..31247277 (25 bp)
AAGCACCTCTTGTCGACATGGAAAT
LOC_Os02g51100
Os.23055.1.A1_at--807--5591Chr02:31247233..31247257 (25 bp)
GAAATAAGAGGCGTTCCTGCTCTGA
LOC_Os02g51100
Os.23055.1.A1_at--93--4291Chr02:31247218..31247242 (25 bp)
CCTGCTCTGAAGTTTTTGGGCGATA
LOC_Os02g51100
Os.23055.1.A1_at--55--9831Chr02:31247159..31247183 (25 bp)
TAAACTTCATCACACCTACTTATTG
LOC_Os02g51100
Os.23055.1.A1_at--66--7351Chr02:31247069..31247093 (25 bp)
GTGCAACTTAGCAGATGCCCAATCT
LOC_Os02g51100
Os.23055.1.A1_at--590--4971Chr02:31247030..31247054 (25 bp)
GCATCTCGCTGAAGGTTTGCCGGAA
LOC_Os02g51100
Os.23055.1.A1_at--15--10211Chr02:31246909..31246933 (25 bp)
TATTTCTGCTTCTTTATCCCTTTAA
LOC_Os02g51100
Os.23055.1.A1_at--126--4631Chr02:31246879..31246903 (25 bp)
GCGATTCTGAGGGTTTTGAGTCCAT
LOC_Os02g51100
Os.23055.1.A1_at--38--7891Chr02:31246868..31246892 (25 bp)
GGTTTTGAGTCCATAACTTTGCACT
LOC_Os02g51100
Os.23055.1.A1_at--654--6711Chr02:31246831..31246855 (25 bp)
GTTCGTGCATCATGTAAAGTCGGTT
LOC_Os02g51100
Target Sequence 
GCTGAACTTAATCCAAGCACCTCTTGTCGACATGGAAATAAGAGGCGTTCCTGCTCTGAAGTTTTTGGGCGATATAGTAT
GGAAGTAACTTCNCAATGGAAAATACGATAAACTTCATCACACCTACTTATTGAAGTGCTTTGCAATGCAAACTTTGGTA
GCTGCAAGTATCAGCATGGATAGAGCTAGAATGCAANTGTGCAACTTAGCAGATGCCCAATCTCATGTGAGTAAGTAGCA
TCTCGCTGAAGGTTTGCCGGAATAGCATATACTAGGGGGATTGTGTTCTAAAAAAAAANNNNNGGGGGGGGGATTGGATC
AAGCTGCACTAATATCAAGTCCATTGAGGCAACATGCCNGTGATATTTCTGCTTCTTTATCCCTTTAATAGGAGCGATTC
TGAGGGTTTTGAGTCCATAACTTTGCACTAAAATTAATTTTGTTCGTGCATCATGTAAAGTCGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23055.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis