Browse Element(s) Details


Os.10275.1.S1_at

Description gb:AK098873.1
DB_XREF= gi:32984082
TID=Os.10275.1
CNT=71
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.10275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001C18, full insert sequence.
FL= gb:AK098873.1 gb:AK061968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5108011/11Geranylgeranyl hydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51040Os.4613.1.S1_at11/112+31214699..31216344Alpha-expansin 15 precursor, putative, expressed
LOC_Os02g51050OsAffx.27250.4.S1_x_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_s_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51060Os.6170.1.S1_at11/112+31222529..31226031glycosyl transferase, group 2 family protein, expressed
LOC_Os02g51070Os.13018.1.S1_a_at11/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51070Os.18301.1.S1_at9/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51080Os.10275.1.S1_at11/112+31240356..31242932Geranylgeranyl hydrogenase, putative, expressed
LOC_Os02g51090OsAffx.12583.1.S1_at11/112+31243291..31244739RWP-RK domain containing protein
LOC_Os02g51100Os.23055.1.A1_at11/112+31246709..31250095anion-transporting ATPase family protein, putative, expressed
LOC_Os02g51110Os.7164.1.S1_at11/112+31260459..31264070MIP family channel proteins containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0045550molecular_functiongeranylgeranyl reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10275.1.S1_at--657--6051Chr02:31242316..31242340 (25 bp)
GAGTTCGACCGCCTCTACTGGCCGA
LOC_Os02g51080
Os.10275.1.S1_at--415--5771Chr02:31242421..31242445 (25 bp)
GACGACTACGTCCAGAGGATGACCT
LOC_Os02g51080
Os.10275.1.S1_at--610--1331Chr02:31242434..31242458 (25 bp)
AGAGGATGACCTTCGACAGCTACCT
LOC_Os02g51080
Os.10275.1.S1_at--707--5311Chr02:31242561..31242585 (25 bp)
GAAGGTCACCTTGTGAGCCTGAGCT
LOC_Os02g51080
Os.10275.1.S1_at--376--1871Chr02:31242595..31242619 (25 bp)
ACGACCGCGATCGAACACTTTGCTT
LOC_Os02g51080
Os.10275.1.S1_at--245--6211Chr02:31242629..31242653 (25 bp)
GAGGCATTAGAAACTGCAATTTGCG
LOC_Os02g51080
Os.10275.1.S1_at--949--5191Chr02:31242644..31242668 (25 bp)
GCAATTTGCGGTGGATCAGTGTGCA
LOC_Os02g51080
Os.10275.1.S1_at--517--7511Chr02:31242654..31242678 (25 bp)
GTGGATCAGTGTGCATGTATAGTAC
LOC_Os02g51080
Os.10275.1.S1_at--543--6891Chr02:31242670..31242694 (25 bp)
GTATAGTACAGATTCGCGGCTGATC
LOC_Os02g51080
Os.10275.1.S1_at--850--6571Chr02:31242680..31242704 (25 bp)
GATTCGCGGCTGATCAAACAGATTT
LOC_Os02g51080
Os.10275.1.S1_at--442--7251Chr02:31242760..31242784 (25 bp)
GTCCGATTTTCTTGTACAACACAAG
LOC_Os02g51080
Target Sequence 
GAGTTCGACCGCCTCTACTGGCCGACGTACAAGGTGCTCGACGTGCTCCAGAAGGTGTTCTACCGCTCCAACGCCGCCCG
CGAGGCGTTCGTCGAGATGTGCGCCGACGACTACGTCCAGAGGATGACCTTCGACAGCTACCTCTACAAGCGCGTCGTGC
CGGGCAACCCNCTCGACGACATCAAGCTCGCCGTCAACACCATCGGCAGCCTCGTCCGCGCCACCGCCCTCCGCCGCGAG
ATGGAGAAGGTCACCTTGTGAGCCTGAGCTGCCATGACCACGACCGCGATCGAACACTTTGCTTCATTTTCTTGAGGCAT
TAGAAACTGCAATTTGCGGTGGATCAGTGTGCATGTATAGTACAGATTCGCGGCTGATCAAACAGATTTGAACAAGCGTA
AGTAGAGATGGATAAGAGAGAGAGGCTGTGTACCGATCGACCCTGTCCGATTTTCTTGTACAACACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis