Browse Element(s) Details


Os.18301.1.S1_at

Description gb:C98998
DB_XREF= gi:3761750
DB_XREF=C98998
CLONE=E3934_1Z
TID=Os.18301.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18301 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g510709/11Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os02g51040Os.4613.1.S1_at11/112+31214699..31216344Alpha-expansin 15 precursor, putative, expressed
LOC_Os02g51050OsAffx.27250.4.S1_x_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_s_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51060Os.6170.1.S1_at11/112+31222529..31226031glycosyl transferase, group 2 family protein, expressed
LOC_Os02g51070Os.13018.1.S1_a_at11/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51070Os.18301.1.S1_at9/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51080Os.10275.1.S1_at11/112+31240356..31242932Geranylgeranyl hydrogenase, putative, expressed
LOC_Os02g51090OsAffx.12583.1.S1_at11/112+31243291..31244739RWP-RK domain containing protein
LOC_Os02g51100Os.23055.1.A1_at11/112+31246709..31250095anion-transporting ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18301.1.S1_at--1036--6731Chr02:31227396..31227420 (25 bp)
GTTCAGTGCCGGATGTTAACCATGT
LOC_Os02g51070
Os.18301.1.S1_at--315--2731Chr02:31227337..31227361 (25 bp)
AAGCACAGGGCTTCTACTGACACTA
LOC_Os02g51070
Os.18301.1.S1_at--25--9931Chr02:31227323..31227347 (25 bp)
TACTGACACTACCATGTCATGCTGC
LOC_Os02g51070
Os.18301.1.S1_at--303--7131Chr02:31227308..31227332 (25 bp)
GTCATGCTGCTATTTGGAACTGTGT
LOC_Os02g51070
Os.18301.1.S1_at--232--7911Chr02:31227253..31227277 (25 bp)
GGATTCGCGCGCTCGTGTTAATGTC
LOC_Os02g51070
Os.18301.1.S1_at--272--3011Chr02:31227220..31227244 (25 bp)
AATGACTGTGTTCCAATAATTGCCA
LOC_Os02g51070
Os.18301.1.S1_at--892--5531Chr02:31227169..31227193 (25 bp)
GAAACACAGCCGGAGACATCTCAGT
LOC_Os02g51070
Os.18301.1.S1_at--396--1411Chr02:31227156..31227180 (25 bp)
AGACATCTCAGTCAGACGGCCATTG
LOC_Os02g51070
Os.18301.1.S1_at--1011--8431Chr02:31227139..31227163 (25 bp)
GGCCATTGCGGCTGCTAGCTCAGTA
LOC_Os02g51070
Os.18301.1.S1_at--234--9091NONE
TGCTAGCTCAGTAGTACCCACAGTA
NONE
Os.18301.1.S1_at--343--6991NONE
GTACCCACAGTAGTACTCTATCCGT
NONE
Target Sequence 
GTTCAGTGCCGGATGTTAACCATGTCTGAATCTTGNCTTTTCTTTCATATAAGCAGTGAAGCACAGGGCTTCTACTGACA
CTACCATGTCATGCTGCTATTTGGAACTGTGTTAGGGGATAGGAACACCATTAAACAACCCGGGATTCGCGCGCTCGTGT
TAATGTCAATGACTAAATGACTGTGTTCCAATAATTGCCATCCCNAGATACTGCACGTACAAGGNAGAAACACAGCCGGA
GACATCTCAGTCAGACGGCCATTGCGGCTGCTAGCTCAGTAGTACCCACAGTAGTACTCTATCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis