Browse Element(s) Details


Os.24760.1.A1_at

Description gb:AK061274.1
DB_XREF= gi:32971292
TID=Os.24760.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E04, full insert sequence.
FL= gb:AK061274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g510306/11methyltransferase, UbiE/COQ5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50980OsAffx.3033.1.S1_x_at11/112+31178954..31179649expressed protein
LOC_Os02g50990Os.7176.2.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.1.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_x_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g51000Os.5807.2.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51000Os.5807.1.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51010OsAffx.12582.1.S1_at11/112+31193145..31193915plant integral membrane protein TIGR01569 containing protein
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os02g51040Os.4613.1.S1_at11/112+31214699..31216344Alpha-expansin 15 precursor, putative, expressed
LOC_Os02g51050OsAffx.27250.4.S1_x_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_s_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51060Os.6170.1.S1_at11/112+31222529..31226031glycosyl transferase, group 2 family protein, expressed
LOC_Os02g51070Os.13018.1.S1_a_at11/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51070Os.18301.1.S1_at9/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24760.1.A1_at--233--2671Chr02:31206348..31206372 (25 bp)
AAGCCTGGTGGTCTCTACATATTCA
LOC_Os02g51030
Os.24760.1.A1_at--1062--9271Chr02:31206525..31206549 (25 bp)
TCCGATTCGTGCAAGGTGCCCTTAA
LOC_Os02g51030
Os.24760.1.A1_at--20--9491Chr02:31206553..31206577 (25 bp)
TCTGCAGCAGTTTGTCTCTGACGGG
LOC_Os02g51030
Os.24760.1.A1_at--527--411Chr02:31206608..31206632 (25 bp)
ATCAGGGATGCTGGGTTCTCGAGCT
LOC_Os02g51030
Os.24760.1.A1_at--223--10591Chr02:31206623..31206647 (25 bp)
TTCTCGAGCTTGGACCTGAACACGA
LOC_Os02g51030
Os.24760.1.A1_at--197--9491Chr02:31206714..31206738 (25 bp)
TCTCCTTTCGTTGTTCCATCTAATT
LOC_Os02g51030
Os.24760.1.A1_at--247--6891Chr02:31206774..31206798 (25 bp)
GTATCACGCTAGGTTTCCAAGGCTG
NONE
Os.24760.1.A1_at--345--4751Chr02:31206795..31206819 (25 bp)
GCTGAATATTCCATGCCACACGTTA
NONE
Os.24760.1.A1_at--378--3311Chr02:31206811..31206835 (25 bp)
CACACGTTAGATGGGCTGGTCTTCA
NONE
Os.24760.1.A1_at--1000--531Chr02:31206865..31206889 (25 bp)
ATGGGCCTTTTCTGTTAACATTTCG
NONE
Os.24760.1.A1_at--965--9811Chr02:31206880..31206904 (25 bp)
TAACATTTCGTTGCTGTTGGGCTGG
NONE
Target Sequence 
AAGCCTGGTGGTCTCTACATATTCATTGAGCATGTTGCTGCNCCTGATGGANCCTTCCTCCGATTCGTGCAAGGTGCCCT
TAATCCTCTGCAGCAGTTTGTCTCTGACGGGTGCCACCTCACCAGAGAAACAGGCGAAATCATCAGGGATGCTGGGTTCT
CGAGCTTGGACCTGAACACGACTCGCNTGTCTACTGCATTTATCCTCAGCCCCCATGTTTATGGAGTAGCATGTAAATGA
TATTTCCTCTCCTTTCGTTGTTCCATCTAATTGTGTAAATTGTTATTTGTCAGCAATATGAGCTACAGTATCACGCTAGG
TTTCCAAGGCTGAATATTCCATGCCACACGTTAGATGGGCTGGTCTTCAGAAATGGCTGGATGCCTCGAAGATATTAAAT
GGGCCTTTTCTGTTAACATTTCGTTGCTGTTGGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24760.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis