Browse Element(s) Details


Os.7176.3.S1_x_at

Description gb:AK060092.1
DB_XREF= gi:32970110
TID=Os.7176.3
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-D05, full insert sequence.
FL= gb:AK060092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5099011/11RING-H2 finger protein ATL1Q, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50970Os.5102.2.S1_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50970Os.5102.1.S1_x_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50980OsAffx.3033.1.S1_x_at11/112+31178954..31179649expressed protein
LOC_Os02g50990Os.7176.2.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.1.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g50990Os.7176.3.S1_x_at11/112+31184904..31189370RING-H2 finger protein ATL1Q, putative, expressed
LOC_Os02g51000Os.5807.2.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51000Os.5807.1.S1_at11/112+31188400..31191828Nuclear movement protein, expressed
LOC_Os02g51010OsAffx.12582.1.S1_at11/112+31193145..31193915plant integral membrane protein TIGR01569 containing protein
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7176.3.S1_x_at--560--7091Chr02:31186369..31186393 (25 bp)
GTCACTGACCAAACACGGAACTCGT
LOC_Os02g50990
Os.7176.3.S1_x_at--503--10251Chr02:31186393..31186417 (25 bp)
TTTGGTGAAGACCTCTCTTGCACTA
LOC_Os02g50990
Os.7176.3.S1_x_at--249--811Chr02:31187244..31187268 (25 bp)
ATGGGTCTTGCCCTGTATGTAGGCA
LOC_Os02g50990
Os.7176.3.S1_x_at--703--9051Chr02:31187308..31187332 (25 bp)
TGCAGGCTCTCCATCTTATTAGAAG
LOC_Os02g50990
Os.7176.3.S1_x_at--234--6491Chr02:31187360..31187384 (25 bp)
GATAGCACCCACCACAGAGTTAATT
LOC_Os02g50990
Os.7176.3.S1_x_at--377--6491Chr02:31187419..31187443 (25 bp)
GATAGGCGTATCTTTTACCAGCGTA
LOC_Os02g50990
Os.7176.3.S1_x_at--685--211Chr02:31187466..31187490 (25 bp)
ATTTGACACTGTTTCTTACGCTGAG
LOC_Os02g50990
Os.7176.3.S1_x_at--707--9511Chr02:31187517..31187541 (25 bp)
TCTCTGTCGCGGAGCTCTTCAAGGC
LOC_Os02g50990
Os.7176.3.S1_x_at--890--10491Chr02:31187534..31187558 (25 bp)
TTCAAGGCCCTGGACCTGGAGAATA
LOC_Os02g50990
Os.7176.3.S1_x_at--242--851Chr02:31187579..31187603 (25 bp)
ATGGCTACATAGTCAGCCGTTTTTA
LOC_Os02g50990
Os.7176.3.S1_x_at--734--4491Chr02:31187594..31187618 (25 bp)
GCCGTTTTTACTTGCTGTTGTACAG
LOC_Os02g50990
Target Sequence 
GTCACTGACCAAACACGGAACTCGTTTGGTGAAGACCTCTCTTGCACTATCTGCCTGCAGGATATTGTAACCGGTGAAAC
GGCGAGGAGATTGCCGAATTGCTCCCACACTTTCCACCAGCCTTGCGTGGACAAATGGCTCGTTGGCCATGGGTCTTGCC
CTGTATGTAGGCAATGTGTGTAACAACAGAAGGTAAAAAAAACCCTGCATTCTGCAGGCTCTCCATCTTATTAGAAGAGA
CTAGTTGTGCAAATGTTTGCTCTTGATAGCACCCACCACAGAGTTAATTATACACAGTAGCTTTGTAATTTACTGTACTA
CTAGATAGGCGTATCTTTTACCAGCGTAAACAGAGGCTGTAAATCAGAGGATTTGACACTGTTTCTTACGCTGAGTTTCA
ATGTAAAATGGAATAAAGGTTTCTCTGTCGCGGAGCTCTTCAAGGCCCTGGACCTGGAGAATATGCTAAGGCCATACTAG
GAAATGGCTACATAGTCAGCCGTTTTTACTTGCTGTTGTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7176.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis