Browse Element(s) Details


Os.7164.1.S1_at

Description gb:AK069842.1
DB_XREF= gi:32979866
TID=Os.7164.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031E16, full insert sequence.
FL= gb:AK069842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5111011/11MIP family channel proteins containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51080Os.10275.1.S1_at11/112+31240356..31242932Geranylgeranyl hydrogenase, putative, expressed
LOC_Os02g51090OsAffx.12583.1.S1_at11/112+31243291..31244739RWP-RK domain containing protein
LOC_Os02g51100Os.23055.1.A1_at11/112+31246709..31250095anion-transporting ATPase family protein, putative, expressed
LOC_Os02g51110Os.7164.1.S1_at11/112+31260459..31264070MIP family channel proteins containing protein, expressed
LOC_Os02g51120OsAffx.3034.1.S1_at11/112+31274715..31277298NAC-domain containing protein 9, putative, expressed
LOC_Os02g51130Os.48353.1.S1_at10/112+31278853..31280690Glycosyl transferase family 8 protein, expressed
LOC_Os02g51140Os.14846.1.S1_at11/112+31284801..31293208expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7164.1.S1_at--1156--5771Chr02:31263677..31263701 (25 bp)
GACGAGATGTCGTCGATCGTGTCCT
LOC_Os02g51110
Os.7164.1.S1_at--810--6391Chr02:31263691..31263715 (25 bp)
GATCGTGTCCTCTTACTCGGAAAAT
LOC_Os02g51110
Os.7164.1.S1_at--1077--2231Chr02:31263712..31263736 (25 bp)
AAATTACCAGTCGATCTCGGTCTCG
LOC_Os02g51110
Os.7164.1.S1_at--679--7131Chr02:31263736..31263760 (25 bp)
GTCATCACTAGCTACGTCTTTGTGT
LOC_Os02g51110
Os.7164.1.S1_at--883--9091Chr02:31263780..31263804 (25 bp)
TGCTGCTTCGTACACGCCGGAGAGA
LOC_Os02g51110
Os.7164.1.S1_at--123--1351Chr02:31263802..31263826 (25 bp)
AGAGTTACATAAAACGCGCGCGCGT
LOC_Os02g51110
Os.7164.1.S1_at--263--10051Chr02:31263879..31263903 (25 bp)
TAGATTGCTCGCTCTGTTAATTCCG
LOC_Os02g51110
Os.7164.1.S1_at--1108--1151Chr02:31263953..31263977 (25 bp)
AGTCTCTGCCGTCAAATTGTGCGTG
LOC_Os02g51110
Os.7164.1.S1_at--621--3171Chr02:31263967..31263991 (25 bp)
AATTGTGCGTGTGTGCCAGGTGTAC
LOC_Os02g51110
Os.7164.1.S1_at--556--1051Chr02:31263984..31264008 (25 bp)
AGGTGTACTATCTCTCCAGCAGTTG
LOC_Os02g51110
Os.7164.1.S1_at--157--9831Chr02:31264041..31264065 (25 bp)
TAAAAGGATGTCACGTTCTCTCCCC
LOC_Os02g51110
Target Sequence 
GACGAGATGTCGTCGATCGTGTCCTCTTACTCGGAAAATTACCAGTCGATCTCGGTCTCGTCATCACTAGCTACGTCTTT
GTGTGTGTTTTGTGTCGTGTCACTGCTGCTTCGTACACGCCGGAGAGAGTTACATAAAACGCGCGCGCGTGCACGGGGGA
GTGGCGCTAGCTTTGGTTGCTTGGTGGTTCGTGTGGGGTACGTAGATTGCTCGCTCTGTTAATTCCGGGGCTGGAGCCTG
CTAATTTTGGGCGTGTGCGTGTGCCGCTTGTGCATCAGTCTCTGCCGTCAAATTGTGCGTGTGTGCCAGGTGTACTATCT
CTCCAGCAGTTGCTTGTTCCACTTCAATTCACCCCCAAAGTAATTAAAAGGATGTCACGTTCTCTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis