Browse Element(s) Details


Os.14846.1.S1_at

Description gb:AK103517.1
DB_XREF= gi:32988726
TID=Os.14846.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131H10, full insert sequence.
FL= gb:AK103517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5114011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51110Os.7164.1.S1_at11/112+31260459..31264070MIP family channel proteins containing protein, expressed
LOC_Os02g51120OsAffx.3034.1.S1_at11/112+31274715..31277298NAC-domain containing protein 9, putative, expressed
LOC_Os02g51130Os.48353.1.S1_at10/112+31278853..31280690Glycosyl transferase family 8 protein, expressed
LOC_Os02g51140Os.14846.1.S1_at11/112+31284801..31293208expressed protein
LOC_Os02g51150Os.9619.1.S1_at11/112+31293730..31295959Protein SUR2, putative, expressed
LOC_Os02g51160OsAffx.24822.1.S1_at11/112+31297671..31300681expressed protein
LOC_Os02g51170OsAffx.24823.1.S1_at11/112+31302554..31303194expressed protein
LOC_Os02g51180Os.9596.1.S1_at10/112+31303885..31306960Cullin family protein, expressed
LOC_Os02g51190OsAffx.29536.5.S1_x_at1/112+31316985..31319277transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14846.1.S1_at--525--411Chr02:31292618..31292642 (25 bp)
ATCAGGGTCCGTCCTATGTGACAGC
LOC_Os02g51140
Os.14846.1.S1_at--256--411Chr02:31292684..31292708 (25 bp)
ATCAGATGCCTGTTTCTTCTACAAG
LOC_Os02g51140
Os.14846.1.S1_at--791--1431Chr02:31292800..31292824 (25 bp)
AAATTGGCCCCAGACAACCTTATTG
LOC_Os02g51140
Os.14846.1.S1_at--456--6931Chr02:31292840..31292864 (25 bp)
GTAGGTACTGGCATCCTGGTACTAT
LOC_Os02g51140
Os.14846.1.S1_at--812--10171Chr02:31292862..31292886 (25 bp)
TATACTCCTGCTCTCTTGAAAGTCA
LOC_Os02g51140
Os.14846.1.S1_at--783--6671Chr02:31292908..31292932 (25 bp)
GTTGCTGCAGAGTATCGATTCCTTT
LOC_Os02g51140
Os.14846.1.S1_at--244--2991Chr02:31293008..31293032 (25 bp)
AATGTGCGGTATTTAGCTGTCTGCC
LOC_Os02g51140
Os.14846.1.S1_at--61--4011Chr02:31293070..31293094 (25 bp)
CGTCCTGCCCTTTCATTTTTTATAT
LOC_Os02g51140
Os.14846.1.S1_at--872--771Chr02:31293093..31293117 (25 bp)
ATGTGGTACGTCTTGTCTTAGCTAA
LOC_Os02g51140
Os.14846.1.S1_at--251--1291Chr02:31293127..31293151 (25 bp)
AGATCGTTCTTCAGTTGTTTGGCTC
LOC_Os02g51140
Os.14846.1.S1_at--851--10231Chr02:31293144..31293168 (25 bp)
TTTGGCTCTAACCTGGTCTGCTAAA
LOC_Os02g51140
Target Sequence 
ATCAGGGTCCGTCCTATGTGACAGCTGCCTATGAGAACCCANGGACCTGCCTACAGTGAAAGCATCCATCAGATGCCTGT
TTCTTCTACAAGGCCTAACGTGCCTGGTGCGCCGGTCTCCTCCNTGTATTNCCTTTGCTGGTGCACCAGCATATCGNTGA
TCACCCCAGTGGCCNNNNNCNNTGAAATTGGCCCCAGACAACCTTATTGTCAGTTGGTGATGGTGTAGGTACTGGCATCC
TGGTACTATACTCCTGCTCTCTTGAAAGTCAGGCTACAAGTTAATCGTACTTGTTGCTGCAGAGTATCGATTCCTTTTTA
TCCCAATTGTAACATAGATTCCTTTATACTGGATCATGGGTTTTATTTCATCAGATTTAATGAACAAAATAAAATGTGCG
GTATTTAGCTGTCTGCCTAGTATTTAGTTTGTGTCGTGAAAGGGAATTCATTATCGTCCTGCCCTTTCATTTTTTATATG
TGGTACGTCTTGTCTTAGCTAAATGATCCTGAGATCGTTCTTCAGTTGTTTGGCTCTAACCTGGTCTGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis