Browse Element(s) Details


OsAffx.24822.1.S1_at

Description tigr:9630.m05022
TID=OsAffx.24822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5116011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51120OsAffx.3034.1.S1_at11/112+31274715..31277298NAC-domain containing protein 9, putative, expressed
LOC_Os02g51130Os.48353.1.S1_at10/112+31278853..31280690Glycosyl transferase family 8 protein, expressed
LOC_Os02g51140Os.14846.1.S1_at11/112+31284801..31293208expressed protein
LOC_Os02g51150Os.9619.1.S1_at11/112+31293730..31295959Protein SUR2, putative, expressed
LOC_Os02g51160OsAffx.24822.1.S1_at11/112+31297671..31300681expressed protein
LOC_Os02g51170OsAffx.24823.1.S1_at11/112+31302554..31303194expressed protein
LOC_Os02g51180Os.9596.1.S1_at10/112+31303885..31306960Cullin family protein, expressed
LOC_Os02g51190OsAffx.29536.5.S1_x_at1/112+31316985..31319277transposon protein, putative, unclassified
LOC_Os02g51200NANA2+31322377..31328273retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24822.1.S1_at--26--1271Chr02:31299468..31299492 (25 bp)
AGATTTATATGGCTTCCTGCCGTGT
LOC_Os02g51160
OsAffx.24822.1.S1_at--948--4491Chr02:31299486..31299510 (25 bp)
GCCGTGTTGTTGTTTCATCATGCAT
LOC_Os02g51160
OsAffx.24822.1.S1_at--1029--631Chr02:31299505..31299529 (25 bp)
ATGCATTTTTGGAAGCTCTGATTAC
LOC_Os02g51160
OsAffx.24822.1.S1_at--685--5271Chr02:31299841..31299865 (25 bp)
GAATGTATGCTTCGTCATGTTCCTG
LOC_Os02g51160
OsAffx.24822.1.S1_at--616--4271Chr02:31299862..31299886 (25 bp)
CCTGGATGAGCTAACACTGGGAACT
LOC_Os02g51160
OsAffx.24822.1.S1_at--541--8171Chr02:31299881..31299905 (25 bp)
GGAACTCTGTCCTCTGAAGGAACTG
LOC_Os02g51160
OsAffx.24822.1.S1_at--424--5551Chr02:31299914..31299938 (25 bp)
GAAACTGGATTCATTGGCCTGTGGA
LOC_Os02g51160
OsAffx.24822.1.S1_at--285--2251Chr02:31299998..31300022 (25 bp)
AAATTTCTGGCTCACAGACTCTTCC
LOC_Os02g51160
OsAffx.24822.1.S1_at--900--10651Chr02:31300019..31300409 (25 bp)
TTCCCCTTTGCAATGTACTCTATTT
LOC_Os02g51160
OsAffx.24822.1.S1_at--566--9831Chr02:31300420..31300444 (25 bp)
TAAACTGCGCCTTAATGCTGATCCA
LOC_Os02g51160
OsAffx.24822.1.S1_at--802--4731Chr02:31300436..31300460 (25 bp)
GCTGATCCAATGCTTATCGTTGAGT
LOC_Os02g51160
Target Sequence 
AGATTTATATGGCTTCCTGCCGTGTTGTTGTTTCATCATGCATTTTTGGAAGCTCTGATTACTTAAGGAGACCAACTAAG
AGCAAGATTGGTCCATACTCTAAGAAGAATGTATGCTTCGTCATGTTCCTGGATGAGCTAACACTGGGAACTCTGTCCTC
TGAAGGAACTGGCCCTGATGAAACTGGATTCATTGGCCTGTGGAGAATTGTTGTAGTTGAAAAATTACCGTACAAAGATA
TGCGGAGAGCAGGAAAGGTGCCAAAATTTCTGGCTCACAGACTCTTCCCCTTTGCAATGTACTCTATTTGGTTGGATAGT
AAACTGCGCCTTAATGCTGATCCAATGCTTATCGTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis