Browse Element(s) Details


Os.2230.1.S1_at

Description gb:AF056027.1
DB_XREF= gi:3377508
GEN=REH1
TID=Os.2230.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.2230 (NCBI UniGene Cluster)
DEF=Oryza sativa auxin transport protein REH1 (REH1) mRNA, complete cds.
PROD=auxin transport protein REH1
FL= gb:AF056027.1 gb:AK102343.1 gb:AK099634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5096011/11Auxin efflux carrier component 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50919NANA2+31131901..31132058NA
LOC_Os02g50930OsAffx.24820.1.S1_at11/112+31135212..31136527Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g50940Os.4657.1.S1_at11/112+31139411..31140268F-box family protein, putative, expressed
LOC_Os02g50950OsAffx.3032.1.S1_at9/112+31144469..31145991hypothetical protein
LOC_Os02g50960Os.2230.1.S1_at11/112+31153034..31156129Auxin efflux carrier component 4, putative, expressed
LOC_Os02g50970Os.5102.2.S1_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50970Os.5102.1.S1_x_at11/112+31166104..31174308Protein kinase domain containing protein, expressed
LOC_Os02g50980OsAffx.3033.1.S1_x_at11/112+31178954..31179649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009630biological_processgravitropism
GO:0009640biological_processphotomorphogenesis
GO:0009926biological_processauxin polar transport
GO:0009942biological_processlongitudinal axis specification
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005737cellular_componentcytoplasm
GO:0009925cellular_componentbasal plasma membrane
GO:0016020cellular_componentmembrane
GO:0045177cellular_componentapical part of cell
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2230.1.S1_at--199--10011Chr02:31153575..31153683 (25 bp)
TAGCATTCTCAGCACAGCTGTCATC
LOC_Os02g50960
Os.2230.1.S1_at--263--3791Chr02:31153520..31153544 (25 bp)
CTCGTCTACTACATCTTGCTTGGGC
LOC_Os02g50960
Os.2230.1.S1_at--1091--8331Chr02:31153498..31153522 (25 bp)
GGCTGTAATCGAGTTGCATGCATGT
LOC_Os02g50960
Os.2230.1.S1_at--548--9051Chr02:31153480..31153504 (25 bp)
TGCATGTAAATTCCTGCTCCTGACA
LOC_Os02g50960
Os.2230.1.S1_at--479--4791Chr02:31153465..31153489 (25 bp)
GCTCCTGACAACCAGCCATGTTAAG
LOC_Os02g50960
Os.2230.1.S1_at--1079--1591Chr02:31153420..31153444 (25 bp)
AGCTGGTACACTGTTTGCAAAGTCA
LOC_Os02g50960
Os.2230.1.S1_at--663--8131Chr02:31153304..31153328 (25 bp)
GGACAGGATGGTAGCTAGCTTAGCT
LOC_Os02g50960
Os.2230.1.S1_at--205--7631Chr02:31153222..31153246 (25 bp)
GGGACACAGGATCCAGTTCAGGTCA
LOC_Os02g50960
Os.2230.1.S1_at--625--10531Chr02:31153206..31153230 (25 bp)
TTCAGGTCACAGAAACGGTTCGGTT
LOC_Os02g50960
Os.2230.1.S1_at--239--9111Chr02:31153145..31153169 (25 bp)
TGCGCTGACCCTTGTAAAACGGACG
LOC_Os02g50960
Os.2230.1.S1_at--1042--2571Chr02:31153128..31153152 (25 bp)
AACGGACGCCGATTCTGACAAGAGA
LOC_Os02g50960
Target Sequence 
TAGCATTCTCAGCACAGCTGTCATCTTTGGCATGCTCATCGCCTTGCCTATCACCCTCGTCTACTACATCTTGCTTGGGC
TGTAATCGAGTTGCATGCATGTAAATTCCTGCTCCTGACAACCAGCCATGTTAAGAAGAGGGGAGAAGAAGACAGAGCTG
GTACACTGTTTGCAAAGTCAGGACTCTTTGATTTTTCTTTTCTTTTCTGTATTTCTTGAAGTAGAATTTGGGAGGAGGGG
GATTGGAAGGGAGTCAAACGAGTCAAGGGGAGGACAGGATGGTAGCTAGCTTAGCTAGGACAATGGTGAGTCACAAAAGA
GCACCAAAAGCAAGTACAAGTACAAAGCTTGGGGGGACACAGGATCCAGTTCAGGTCACAGAAACGGTTCGGTTTTGGGA
GGGGATTGTGGGAGTTTTGGTTGGCTGCGCTGCGCTGACCCTTGTAAAACGGACGCCGATTCTGACAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis