Browse Element(s) Details


OsAffx.15392.1.S1_at

Description tigr:9634.m01248
TID=OsAffx.15392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g126601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12630Os.14330.1.S1_at11/116+6891497..6894583Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os06g12640OsAffx.27586.1.S1_at11/116+6896997..6900337expressed protein
LOC_Os06g12650OsAffx.4816.1.S1_at11/116+6906712..6909524hypothetical protein
LOC_Os06g12660Os.51586.1.S1_at8/116+6914784..6915583expressed protein
LOC_Os06g12660OsAffx.15392.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12660Os.4657.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12669NANA6+6920622..6921359NA
LOC_Os06g12680Os.55422.1.S1_at11/116+6922216..6923998Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12690Os.9510.1.S1_s_at11/116+6927366..6931491DCN1-like protein 2, putative, expressed
LOC_Os06g12700OsAffx.15394.1.S1_at11/116+6936046..6936369hypothetical protein
LOC_Os06g12710NANA6+6937496..6943387retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15392.1.S1_at--998--7491Chr06:6914991..6915010 (20 bp)
GTGGACGCGCTGATGAAGGTTTTGG
LOC_Os06g12660
OsAffx.15392.1.S1_at--35--6811Chr06:6916057..6916081 (25 bp)
GTTTTGGACGATGACAGGTCAGTCT
NONE
OsAffx.15392.1.S1_at--919--671Chr06:6916067..6916091 (25 bp)
ATGACAGGTCAGTCTCGGAGTCCAA
NONE
OsAffx.15392.1.S1_at--55--2131Chr06:6916070..6916094 (25 bp)
ACAGGTCAGTCTCGGAGTCCAACTC
NONE
OsAffx.15392.1.S1_at--128--6111Chr06:6916084..6916108 (25 bp)
GAGTCCAACTCCTTGCCAACATTTA
NONE
OsAffx.15392.1.S1_at--643--10691Chr06:6916096..6916120 (25 bp)
TTGCCAACATTTACCCTGCCTGTTC
NONE
OsAffx.15392.1.S1_at--1160--171Chr06:6916104..6916128 (25 bp)
ATTTACCCTGCCTGTTCGGCAGTCG
NONE
OsAffx.15392.1.S1_at--123--3951Chr06:6916120..6916144 (25 bp)
CGGCAGTCGGGTTGTGAGGGTTGTC
NONE
OsAffx.15392.1.S1_at--891--9071Chr06:6916145..6916169 (25 bp)
TGCTCTCATCTCTGATGGTCCGAAT
NONE
OsAffx.15392.1.S1_at--655--9611Chr06:6916150..6916174 (25 bp)
TCATCTCTGATGGTCCGAATTGAGA
NONE
OsAffx.15392.1.S1_at--694--6251Chr06:6916158..6916182 (25 bp)
GATGGTCCGAATTGAGAACGGTGAT
NONE
Target Sequence 
GTGGACGCGCTGATGAAGGTTTTGGACGATGACAGGTCAGTCTCGGAGTCCAACTCCTTGCCAACATTTACCCTGCCTGT
TCGGCAGTCGGGTTGTGAGGGTTGTCTGCTCTCATCTCTGATGGTCCGAATTGAGAACGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis