Browse Element(s) Details


OsAffx.27586.1.S1_at

Description tigr:9634.m01246
TID=OsAffx.27586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1264011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12620OsAffx.27585.1.S1_at7/116+6877938..6878420expressed protein
LOC_Os06g12630Os.14330.1.S1_at11/116+6891497..6894583Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os06g12640OsAffx.27586.1.S1_at11/116+6896997..6900337expressed protein
LOC_Os06g12650OsAffx.4816.1.S1_at11/116+6906712..6909524hypothetical protein
LOC_Os06g12660Os.51586.1.S1_at8/116+6914784..6915583expressed protein
LOC_Os06g12660OsAffx.15392.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12660Os.4657.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12669NANA6+6920622..6921359NA
LOC_Os06g12680Os.55422.1.S1_at11/116+6922216..6923998Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27586.1.S1_at--131--6931Chr06:6899016..6899040 (25 bp)
GTAGGATCCGTAGCTCGACGAACAC
LOC_Os06g12640
OsAffx.27586.1.S1_at--270--7311Chr06:6899045..6899069 (25 bp)
GTGCGTGTGCTTACTTATCGTGCAA
LOC_Os06g12640
OsAffx.27586.1.S1_at--916--9411Chr06:6899062..6899086 (25 bp)
TCGTGCAAACGTGAACTCGGTGCCT
LOC_Os06g12640
OsAffx.27586.1.S1_at--825--1011Chr06:6899131..6899155 (25 bp)
AGGTCAGACGTCTTCCTCGACAGGG
LOC_Os06g12640
OsAffx.27586.1.S1_at--951--5651Chr06:6899149..6899173 (25 bp)
GACAGGGCTATCAGGTCTCTACCAG
LOC_Os06g12640
OsAffx.27586.1.S1_at--1069--9971Chr06:6899168..6899192 (25 bp)
TACCAGCAGGGTTCCACTCAAGCAG
LOC_Os06g12640
OsAffx.27586.1.S1_at--867--5831Chr06:6899319..6899343 (25 bp)
GACCATCAGATGTCTTTGCGGGAGT
LOC_Os06g12640
OsAffx.27586.1.S1_at--149--3311Chr06:6899379..6899403 (25 bp)
CACACGTGCCGCTAGGAGTGAGCAT
LOC_Os06g12640
OsAffx.27586.1.S1_at--1007--6151Chr06:6899424..6899569 (25 bp)
GAGGTTCCACAGGTGTTGGCTCATC
LOC_Os06g12640
OsAffx.27586.1.S1_at--1026--5171Chr06:6900223..6900244 (22 bp)
GCAAGTTCTTTCACTCAGCTATCAG
LOC_Os06g12640
OsAffx.27586.1.S1_at--276--1571Chr06:6900236..6900260 (25 bp)
AGCTATCAGTTCTCTATCATGTCGA
LOC_Os06g12640
Target Sequence 
GTAGGATCCGTAGCTCGACGAACACGATCGTGCGTGTGCTTACTTATCGTGCAAACGTGAACTCGGTGCCTCCGCTAGCG
GTACCTCAGCACCGGCCACAGGCCCCTGTGCCCGGAGGTCAGACGTCTTCCTCGACAGGGCTATCAGGTCTCTACCAGCA
GGGTTCCACTCAAGCAGCCACAAGTCAACACATAGCTCCCCTTCCCAAAGGTTTCGTTAGACCATCAGATGTCTTTGCGG
GAGTTGGTCCGCCCATGCAAGGAACCTGTGCCCCTCGTCCACACGTGCCGCTAGGAGTGAGCATTGGCAATGAGTTTATT
CCAGGAGGTTCCACAGGTGTTGGCTCATCTGCGCAGGGGTCACAAACCACTCCGACCTCAGATTGTCATGGTAAGAGGAG
GAAGCCTTGGAAGGATAGAGGTTTCGGGCAAGTTCTTTCACTCAGCTATCAGTTCTCTATCATGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis