Browse Element(s) Details


OsAffx.27585.1.S1_at

Description tigr:9634.m01244
TID=OsAffx.27585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g126207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12610Os.54305.1.S1_at11/116+6865394..6868522Auxin efflux carrier component 1, putative, expressed
LOC_Os06g12620OsAffx.27585.1.S1_at7/116+6877938..6878420expressed protein
LOC_Os06g12630Os.14330.1.S1_at11/116+6891497..6894583Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os06g12640OsAffx.27586.1.S1_at11/116+6896997..6900337expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27585.1.S1_at--902--9512Chr03:27952715..27952734 (20 bp)
TCTCTCCACCACTGTAGATGGTGGT
NONE
OsAffx.27585.1.S1_at--105--4371Chr06:6878506..6878530 (25 bp)
CCACTGTAGATGGTGGTCTCGGGCT
NONE
OsAffx.27585.1.S1_at--618--9431Chr06:6878451..6878475 (25 bp)
TCGGGCTCACGCGACGGCTGCTTTA
NONE
OsAffx.27585.1.S1_at--618--4091Chr06:6878440..6878464 (25 bp)
CGACGGCTGCTTTAGACTCCGACGA
NONE
OsAffx.27585.1.S1_at--383--7211Chr06:6878385..6878409 (25 bp)
GTCGTCAACCATCTCTGCGGTGGGA
LOC_Os06g12620
OsAffx.27585.1.S1_at--447--1731Chr06:6878378..6878402 (25 bp)
ACCATCTCTGCGGTGGGAGTCCTCG
LOC_Os06g12620
OsAffx.27585.1.S1_at--596--8031Chr06:6878363..6878387 (25 bp)
GGAGTCCTCGGGACTTCCTTTCTCT
LOC_Os06g12620
OsAffx.27585.1.S1_at--989--9551Chr06:6878273..6878297 (25 bp)
TCTTCGACCCTATCTGCGGCGGGAA
LOC_Os06g12620
OsAffx.27585.1.S1_at--195--7831Chr06:6878117..6878141 (25 bp)
GGTCACCGGTGTTGTCTATGGCGAT
LOC_Os06g12620
OsAffx.27585.1.S1_at--644--9351Chr06:6878083..6878107 (25 bp)
TCGAAGGACAGCTCCGGGCTACCGA
LOC_Os06g12620
OsAffx.27585.1.S1_at--944--451Chr06:6877980..6878004 (25 bp)
ATCTCGTCTCTCCATCAGGAGAGGG
LOC_Os06g12620
Target Sequence 
TCTCTCCACCACTGTAGATGGTGGTCTCGGGCTGACGACGAGGGCGACATCCCGGCGGCCACCTCGGGCTCACGCGACGG
CTGCTTTAGACTCCGACGACAACTACAAGGAGGTCGAGATGCAGTCGCCGTCGTCAACCATCTCTGCGGTGGGAGTCCTC
GGGACTTCCTTTCTCTCCACCACCATCGTTGACCACCTCCGCGGTGGGAGGCCTTGGGAGCCACTGCCGTCGACACCGTC
GTCTTCGACCCTATCTGCGGCGGGAAGCTCAGGAGCCACCGCCGCCGCCGTCATTGACCTCATCTGCGCGGGAGAGCTTG
GGAGCCGCCGCCGCCGTTGTTGTCCTCGTCGTGGTCGTCTGCGAGCCGCACCGCCTCTGCCCAGATCTGGCGAGGAGGGT
CACCGGTGTTGTCTATGGCGATGGAGGAGGGTCGAAGGACAGCTCCGGGCTACCGATGGAGGATGCGTCGGGCCTCGAGC
TCCGCCGCCATCGGCCCCGAGCTTCATCGCTGGTGCTGCCGACGCCCGACACCCATCTCGTCTCTCCATCAGGAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis