Browse Element(s) Details


Os.14330.1.S1_at

Description gb:AK059285.1
DB_XREF= gi:32969303
TID=Os.14330.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D09, full insert sequence.
FL= gb:AK070471.1 gb:AK059285.1 gb:AK106013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1263011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12610Os.54305.1.S1_at11/116+6865394..6868522Auxin efflux carrier component 1, putative, expressed
LOC_Os06g12620OsAffx.27585.1.S1_at7/116+6877938..6878420expressed protein
LOC_Os06g12630Os.14330.1.S1_at11/116+6891497..6894583Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os06g12640OsAffx.27586.1.S1_at11/116+6896997..6900337expressed protein
LOC_Os06g12650OsAffx.4816.1.S1_at11/116+6906712..6909524hypothetical protein
LOC_Os06g12660Os.51586.1.S1_at8/116+6914784..6915583expressed protein
LOC_Os06g12660OsAffx.15392.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12660Os.4657.1.S1_at1/116+6914784..6915583expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010193biological_processresponse to ozone
GO:0005739cellular_componentmitochondrion
GO:0045174molecular_functionglutathione dehydrogenase (ascorbate) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14330.1.S1_at--1121--7171Chr06:6892441..6892465 (25 bp)
GTCTGTTCCAGATTCACTTTCACAT
LOC_Os06g12630
Os.14330.1.S1_at--685--751Chr06:6891966..6891990 (25 bp)
ATGTCATTGCTGGATGGCGCCCAAA
LOC_Os06g12630
Os.14330.1.S1_at--41--10131Chr06:6891830..6891854 (25 bp)
TATGATTACCACTTGTTGCTGCTGA
LOC_Os06g12630
Os.14330.1.S1_at--793--10711Chr06:6891815..6891839 (25 bp)
TTGCTGCTGAAATATCTGGGCATTT
LOC_Os06g12630
Os.14330.1.S1_at--954--3891Chr06:6891800..6891824 (25 bp)
CTGGGCATTTCTTTTGTTGCTAATA
LOC_Os06g12630
Os.14330.1.S1_at--785--7051Chr06:6891725..6891749 (25 bp)
GTAAGGTTGATACTTTTCTGGTCAA
LOC_Os06g12630
Os.14330.1.S1_at--896--3091Chr06:6891695..6891719 (25 bp)
AATATCGGTTAATCAGTGGCTTTCT
LOC_Os06g12630
Os.14330.1.S1_at--364--3471Chr06:6891682..6891706 (25 bp)
CAGTGGCTTTCTTAGTTGGCATTAA
LOC_Os06g12630
Os.14330.1.S1_at--41--271Chr06:6891577..6891601 (25 bp)
ATAGTTCTTTCTCTAGAGTCTAGTC
LOC_Os06g12630
Os.14330.1.S1_at--1084--6251Chr06:6891536..6891560 (25 bp)
GATGTAAAGTCACTGGCGACCCTGG
LOC_Os06g12630
Os.14330.1.S1_at--161--8331Chr06:6891522..6891546 (25 bp)
GGCGACCCTGGGAAACAATTTACAT
LOC_Os06g12630
Target Sequence 
GTCTGTTCCAGATTCACTTTCACATGTGAAAAAATATATGAAGACTATCTTTTCAATGGATTCATTTGTCAAGACTATAG
CTCTGCAAGAGGATGTCATTGCTGGATGGCGCCCAAAGGTCATGGGTTAAATTGTAGCTGTAAAAGTAAGGCACTCTGAT
AAACTATAAACTATACATCATACTTTCTTCAGNAAAGCTAGAATTATACCACACACAAACAATTTTCGTATGATTACCAC
TTGTTGCTGCTGAAATATCTGGGCATTTCTTTTGTTGCTAATAGTTTATCGGTGAGTAAGACATTCCAGAAATGATGATG
ATTATGATAAGATGTAAGGTTGATACTTTTCTGGTCAACTGGAAATATCGGTTAATCAGTGGCTTTCTTAGTTGGCATTA
ATCTATAGCGAGTCATAGGGACAAACAACACATGAAGTGCCAAAAAACACAAGTTTATGTGCAGCTATTGATTTATATGC
AATAGTTCTTTCTCTAGAGTCTAGTCATGACTCATGAAGATAGATGTAAAGTCACTGGCGACCCTGGGAAACAATTTACA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis