Browse Element(s) Details


OsAffx.27614.1.S1_at

Description tigr:9634.m01343
TID=OsAffx.27614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 58431-59672
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1352011/11SAM dependent carboxyl methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13500NANA6+7438413..7442219retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13510OsAffx.4829.1.S1_at11/116+7454886..7455585Benzoate carboxyl methyltransferase, putative
LOC_Os06g13520OsAffx.27614.1.S1_at11/116+7458468..7460721SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13530Os.11831.1.S1_at1/116+7467751..7468414Benzoate carboxyl methyltransferase, putative, expressed
LOC_Os06g13540OsAffx.10048.1.S1_x_at1/116+7468965..7473317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13550NANA6+7473909..7474599Jasmonate O-methyltransferase, putative
LOC_Os06g13560Os.11831.1.S1_at11/116+7479074..7481195SAM dependent carboxyl methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009694biological_processjasmonic acid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0005737cellular_componentcytoplasm
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0030795molecular_functionjasmonate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27614.1.S1_at--1025--2031Chr06:7459857..7459881 (25 bp)
ACTTTCTTGAGTTGCGTTCGGAGGA
LOC_Os06g13520
OsAffx.27614.1.S1_at--914--9431Chr06:7459874..7459898 (25 bp)
TCGGAGGAACTCATATCTGGTGGTA
LOC_Os06g13520
OsAffx.27614.1.S1_at--589--6251Chr06:7459900..7459924 (25 bp)
GATGGTGCTAACTTTTCTTGGACGG
LOC_Os06g13520
OsAffx.27614.1.S1_at--37--6031Chr06:7460344..7460368 (25 bp)
GAGATGCTTGACTCCTTTAACATTC
LOC_Os06g13520
OsAffx.27614.1.S1_at--151--2011Chr06:7460448..7460472 (25 bp)
ACTCGAGTCAAGCTGGGATCCACAA
LOC_Os06g13520
OsAffx.27614.1.S1_at--492--951Chr06:7460487..7460511 (25 bp)
AGGACATACTGTGCTAGACCCTGTT
LOC_Os06g13520
OsAffx.27614.1.S1_at--76--7771Chr06:7460520..7460544 (25 bp)
GGTGAACGTCGCCAAGTCCATAAGA
LOC_Os06g13520
OsAffx.27614.1.S1_at--588--6151Chr06:7460556..7460580 (25 bp)
GAGGTTGTTTGCTACTCATTTCGGG
LOC_Os06g13520
OsAffx.27614.1.S1_at--303--7651Chr06:7460579..7460603 (25 bp)
GGGAGTCTATAATGCCATTGCTCTT
LOC_Os06g13520
OsAffx.27614.1.S1_at--1107--4811Chr06:7460598..7460622 (25 bp)
GCTCTTCTCAAGGTTCGCAAGCAAT
LOC_Os06g13520
OsAffx.27614.1.S1_at--814--4871Chr06:7460660..7460684 (25 bp)
GCATTTTTTCCAACGTGGGAGTCCT
LOC_Os06g13520
Target Sequence 
ACTTTCTTGAGTTGCGTTCGGAGGAACTCATATCTGGTGGTAAGATGGTGCTAACTTTTCTTGGACGGAAGAATGACAAC
ATATTTGATGAAGATAAAAATATTCTTTATGAATTAATTTCACAAGCATTACAATCACTTGTCATTGAGGGCCTCGTGGA
GAAGGAGATGCTTGACTCCTTTAACATTCCATTGTATGGACCATCGGTCAATGAAGTTAGAACAGCCATCATGCAACAAA
AGCTTTTCTCCATCAACCACATCAAAATACTCGAGTCAAGCTGGGATCCACAAGATGACGAATTCGAAGGACATACTGTG
CTAGACCCTGTTGAGTCTGGGGTGAACGTCGCCAAGTCCATAAGAGCAGTTATGGAGAGGTTGTTTGCTACTCATTTCGG
GGAGTCTATAATGCCATTGCTCTTCTCAAGGTTCGCAAGCAATGTCACCAAATACATTGAGAAAAACACAACTAGAAAAA
GCATTTTTTCCAACGTGGGAGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis