Browse Element(s) Details


OsAffx.27639.1.S1_at

Description tigr:9634.m01471
TID=OsAffx.27639.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1470011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14670Os.55096.1.S1_at11/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14670Os.57514.1.S1_x_at1/116+8250039..8251391Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g14680NANA6+8255352..8258661transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g14690NANA6+8267311..8267880transposon protein, putative, unclassified
LOC_Os06g14700OsAffx.27639.1.S1_at11/116+8271684..8272220Myb-like DNA-binding domain containing protein
LOC_Os06g14710NANA6+8282059..8282487Myb-like DNA-binding domain containing protein
LOC_Os06g14720NANA6+8293715..8294335retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27639.1.S1_at--56--4512Chr06:8275652..8275676 (25 bp)
GCCGAGCGGGAGGTGCTGCGTCGTC
NONE
OsAffx.27639.1.S1_at--690--6032Chr06:8275988..8276012 (25 bp)
GAGATCGGCACGAGCGATGAGCTCC
NONE
OsAffx.27639.1.S1_at--292--1292Chr06:8275989..8276013 (25 bp)
AGATCGGCACGAGCGATGAGCTCCT
NONE
OsAffx.27639.1.S1_at--688--492Chr06:8275991..8276015 (25 bp)
ATCGGCACGAGCGATGAGCTCCTCA
NONE
OsAffx.27639.1.S1_at--343--9452Chr06:8275992..8276016 (25 bp)
TCGGCACGAGCGATGAGCTCCTCAG
NONE
OsAffx.27639.1.S1_at--1072--8232Chr06:8275994..8276018 (25 bp)
GGCACGAGCGATGAGCTCCTCAGGA
NONE
OsAffx.27639.1.S1_at--879--5092Chr06:8275995..8276019 (25 bp)
GCACGAGCGATGAGCTCCTCAGGAA
NONE
OsAffx.27639.1.S1_at--658--3352Chr06:8275996..8276020 (25 bp)
CACGAGCGATGAGCTCCTCAGGAAG
NONE
OsAffx.27639.1.S1_at--108--1872Chr06:8275997..8276021 (25 bp)
ACGAGCGATGAGCTCCTCAGGAAGT
NONE
OsAffx.27639.1.S1_at--131--4092Chr06:8275998..8276022 (25 bp)
CGAGCGATGAGCTCCTCAGGAAGTT
NONE
OsAffx.27639.1.S1_at--1041--512Chr06:8276038..8276062 (25 bp)
ATCGATGCTGTCTCCGGCCACGGTG
NONE
Target Sequence 
GCCGAGCGGGAGGTGCTGCGTCGTCCTGCGCATCANGCTCCNGNCGGCGTGGACGCCCGAGGAGGACGCCGCCCTGGAGC
GCCTCGCCGTGGAGAACGGCTCCCGCCACTGGCGCCGCGTGGCGGCGCAGATGCCGCGCAAGCGCTCGCCNGNGCAGTGC
CGCGACAGGTGGAGGNACCACCTCGCCCGCGACGTGTTCCACCGCCCCTNCACCGCGGCCGACGACGACGAGCTCACCCG
CCTCGTCCTGCGCCCCGGCGGNGGNGGCGACCGATGGAAGGACATCAGCAGNGCGGTGCACGGCCGCAGCTCGCGCTCCG
TGAAGCGCCGGTGGATGGAGATCGGCACGAGCGATGAGCTCCTCAGGAAGTTGNNGCACCCCCGGTCATCGATGCTGTCT
CCGGCCACGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis