Browse Element(s) Details


OsAffx.2766.1.S1_at

Description tigr:9630.m02550
TID=OsAffx.2766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2697011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26920NANA2+15805055..15811017retrotransposon protein, putative, unclassified
LOC_Os02g26930NANA2+15811640..15814771retrotransposon protein, putative, unclassified
LOC_Os02g26940Os.52372.1.S1_at11/112+15815665..15820107vegetative storage protein, putative, expressed
LOC_Os02g26950OsAffx.12215.1.S1_at11/112+15822186..15822868hypothetical protein
LOC_Os02g26960OsAffx.12216.1.S1_at11/112+15823380..15827304expressed protein
LOC_Os02g26970OsAffx.2766.1.S1_at11/112+15828555..15829232hypothetical protein
LOC_Os02g26984Os.14896.1.S1_at11/112+15837028..15850339expressed protein
LOC_Os02g26984OsAffx.19099.1.S1_at1/112+15837028..15850339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2766.1.S1_at--1093--2091Chr02:15828972..15828996 (25 bp)
ACATCGCAAGCATTGTGGTTCCCCA
LOC_Os02g26970
OsAffx.2766.1.S1_at--967--11Chr02:15828983..15829007 (25 bp)
ATTGTGGTTCCCCATCCTGGATCAG
LOC_Os02g26970
OsAffx.2766.1.S1_at--114--6451Chr02:15829002..15829026 (25 bp)
GATCAGCTCACGCTAGACCTGCTAG
LOC_Os02g26970
OsAffx.2766.1.S1_at--1040--4851Chr02:15829022..15829046 (25 bp)
GCTAGCACAACTCCGGTCTGACTTA
LOC_Os02g26970
OsAffx.2766.1.S1_at--390--7131Chr02:15829037..15829061 (25 bp)
GTCTGACTTAACTTCGGCTACACAA
LOC_Os02g26970
OsAffx.2766.1.S1_at--836--8311Chr02:15829052..15829076 (25 bp)
GGCTACACAAGCACATGCCCTTGCT
LOC_Os02g26970
OsAffx.2766.1.S1_at--274--611Chr02:15829066..15829090 (25 bp)
ATGCCCTTGCTTTCAAAGGCGAGCT
LOC_Os02g26970
OsAffx.2766.1.S1_at--368--7691Chr02:15829097..15829121 (25 bp)
GGGTCTTGCTATCAAGCCGATTGCC
LOC_Os02g26970
OsAffx.2766.1.S1_at--33--10171Chr02:15829106..15829130 (25 bp)
TATCAAGCCGATTGCCAGAGAGGTG
LOC_Os02g26970
OsAffx.2766.1.S1_at--432--1491Chr02:15829150..15829174 (25 bp)
AGCCGGCCGAGGAACTCCAAGTTCT
LOC_Os02g26970
OsAffx.2766.1.S1_at--86--5471Chr02:15829161..15829185 (25 bp)
GAACTCCAAGTTCTAGTCGAAGCAG
LOC_Os02g26970
Target Sequence 
ACATCGCAAGCATTGTGGTTCCCCATCCTGGATCAGCTCACGCTAGACCTGCTAGCACAACTCCGGTCTGACTTAACTTC
GGCTACACAAGCACATGCCCTTGCTTTCAAAGGCGAGCTAGGACGGGGTCTTGCTATCAAGCCGATTGCCAGAGAGGTGG
AGCGACTGGAGATGGCCCAGCCGGCCGAGGAACTCCAAGTTCTAGTCGAAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis