Browse Element(s) Details


OsAffx.27700.1.S1_at

Description tigr:9634.m01829
TID=OsAffx.27700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1898011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18960Os.56815.1.S1_at11/116+10779824..10783834expressed protein
LOC_Os06g18970OsAffx.27699.1.S1_at10/116+10790823..10797650hypothetical protein
LOC_Os06g18970Os.41695.15.S1_s_at7/116+10790823..10797650hypothetical protein
LOC_Os06g18970OsAffx.29202.1.S1_at1/116+10790823..10797650hypothetical protein
LOC_Os06g18980OsAffx.27700.1.S1_at11/116+10802013..10802563expressed protein
LOC_Os06g18990Os.52488.1.S1_at11/116+10805443..10808644expressed protein
LOC_Os06g19000OsAffx.27701.1.S1_at11/116+10809808..10810930hypothetical protein
LOC_Os06g19010Os.49938.1.S1_at10/116+10812017..10815112expressed protein
LOC_Os06g19020OsAffx.27702.1.S1_at10/116+10817801..10818535hypothetical protein
LOC_Os06g19030NANA6+10820537..10821565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g19040NANA6+10825032..10829372retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27700.1.S1_at--275--10451Chr06:10802280..10802304 (25 bp)
TTCCGACTCCGAGGTTTCGGGCCTG
LOC_Os06g18980
OsAffx.27700.1.S1_at--1078--5571Chr06:10802322..10802346 (25 bp)
GAAATGTCGCACTTCCGCCCGTGAG
LOC_Os06g18980
OsAffx.27700.1.S1_at--1102--4531Chr06:10802338..10802362 (25 bp)
GCCCGTGAGCGTTCGGCGACATTCC
LOC_Os06g18980
OsAffx.27700.1.S1_at--118--5691Chr06:10802355..10802379 (25 bp)
GACATTCCTCGCCTCTGGGAGGCTA
LOC_Os06g18980
OsAffx.27700.1.S1_at--934--9451Chr06:10802368..10802392 (25 bp)
TCTGGGAGGCTACACTGGAGTCTAC
LOC_Os06g18980
OsAffx.27700.1.S1_at--136--9871Chr06:10802378..10802402 (25 bp)
TACACTGGAGTCTACTATGGGAGCC
LOC_Os06g18980
OsAffx.27700.1.S1_at--1043--9511Chr06:10802388..10802412 (25 bp)
TCTACTATGGGAGCCATGGTCGTCG
LOC_Os06g18980
OsAffx.27700.1.S1_at--249--1511Chr06:10802414..10802438 (25 bp)
AGCACGGCGATGTGCCCATGCCTCG
LOC_Os06g18980
OsAffx.27700.1.S1_at--910--591Chr06:10802431..10802455 (25 bp)
ATGCCTCGCGTCTGTGCCTGGTGCA
LOC_Os06g18980
OsAffx.27700.1.S1_at--190--7291Chr06:10802444..10802468 (25 bp)
GTGCCTGGTGCACACGCTCGGATTT
LOC_Os06g18980
OsAffx.27700.1.S1_at--875--1831Chr06:10802457..10802520 (25 bp)
ACGCTCGGATTTCCAGCTGTGTTGC
LOC_Os06g18980
Target Sequence 
TTCCGACTCCGAGGTTTCGGGCCTGCCCGGCAGGTGTTCGACGAAATGTCGCACTTCCGCCCGTGAGCGTTCGGCGACAT
TCCTCGCCTCTGGGAGGCTACACTGGAGTCTACTATGGGAGCCATGGTCGTCGGAGCACGGCGATGTGCCCATGCCTCGC
GTCTGTGCCTGGTGCACACGCTCGGATTTCCAGCTGTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis