Browse Element(s) Details


OsAffx.27811.1.S1_at

Description tigr:9634.m02444
TID=OsAffx.27811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g246909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24650NANA6+14473281..14473652retrotransposon protein, putative, unclassified
LOC_Os06g24660OsAffx.8916.1.S1_at2/116+14482685..14485693hypothetical protein
LOC_Os06g24670NANA6+14486499..14489310retrotransposon protein, putative, unclassified
LOC_Os06g24680NANA6+14490210..14492750retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24690OsAffx.27811.1.S1_at9/116+14494583..14496814hypothetical protein
LOC_Os06g24704Os.27856.1.S1_at11/116+14503082..14511951Acyl-coenzyme A oxidase 3, peroxisomal precursor, putative, expressed
LOC_Os06g24720NANA6+14521418..14521889retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27811.1.S1_at--422--6131Chr06:14496720..14496744 (25 bp)
GAGGGCACCAATGTGTAGAGCGCGA
LOC_Os06g24690
OsAffx.27811.1.S1_at--1039--5791Chr06:14496697..14496721 (25 bp)
GACGCGGCGAACTCATTGATGGCTC
LOC_Os06g24690
OsAffx.27811.1.S1_at--425--2011Chr06:14496687..14496711 (25 bp)
ACTCATTGATGGCTCGGACGACGAC
LOC_Os06g24690
OsAffx.27811.1.S1_at--447--5771Chr06:14496668..14496692 (25 bp)
GACGACGGACGGTGACAATCAACGA
LOC_Os06g24690
OsAffx.27811.1.S1_at--893--8951NONE
TGACAATCAACGACGGTGGCTACCA
NONE
OsAffx.27811.1.S1_at--1020--1913Chr10:3148053..3148566 (25 bp)
ACGGTGGCTACCAGAGAGGTGTAAT
NONE
OsAffx.27811.1.S1_at--689--814Chr12:10148310..10148334 (25 bp)
ATGGTGCGGGTTTAATGTATGATTT
NONE
OsAffx.27811.1.S1_at--1024--10411Chr06:14495431..14495455 (25 bp)
TTATCAGCTGCTATATGTCGAGTGC
LOC_Os06g24690
OsAffx.27811.1.S1_at--431--4771Chr06:14495425..14495449 (25 bp)
GCTGCTATATGTCGAGTGCACAGGT
LOC_Os06g24690
OsAffx.27811.1.S1_at--651--7211Chr06:14495415..14495439 (25 bp)
GTCGAGTGCACAGGTATAGAGTAGT
LOC_Os06g24690
OsAffx.27811.1.S1_at--514--6931NONE
GTAGTATTTAGTAAGGTGATCAACC
NONE
Target Sequence 
GAGGGCACCAATGTGTAGAGCGCGACGCGGCGAACTCATTGATGGCTCGGACGACGACGGACGGTGACAATCAACGACGG
TGGCTACCAGAGAGGTGTAATGGTGCGGGTTTAATGTATGATTTATCAGCTGCTATATGTCGAGTGCACAGGTATAGAGT
AGTATTTAGTAAGGTGATCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis