Browse Element(s) Details


OsAffx.27918.1.S1_x_at

Description gb:NM_196265.1
DB_XREF= gi:37533889
TID=OsAffx.27918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g336601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33610Os.17491.1.S1_at1/116+19563325..19568252Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33620OsAffx.15715.1.S1_x_at11/116+19575635..19576369hypothetical protein
LOC_Os06g33630Os.45974.1.A1_at1/116+19577862..19578161hypothetical protein
LOC_Os06g33640Os.55529.1.S1_at11/116+19582326..19584411CAPIP1, putative, expressed
LOC_Os06g33650OsAffx.27917.1.S1_at10/116+19585428..19588626hypothetical protein
LOC_Os06g33650OsAffx.1755.1.S1_x_at2/116+19585428..19588626hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_x_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.1.S1_x_at1/116+19592749..19594298hypothetical protein
LOC_Os06g33669NANA6+19596284..19596641NA
LOC_Os06g33680OsAffx.27919.1.S1_at11/116+19598280..19602399hypothetical protein
LOC_Os06g33690Os.55529.1.S1_at2/116+19603065..19605119CAPIP1, putative, expressed
LOC_Os06g33700OsAffx.27920.1.S1_at11/116+19609357..19609802hypothetical protein
LOC_Os06g33710Os.4600.1.S1_at10/116+19613317..19618692Spermidine synthase 2, putative, expressed
LOC_Os06g33720Os.54557.1.S1_at10/116+19618926..19620613Flavin-binding monooxygenase-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27918.1.S1_x_at--587--3751Chr06:19592845..19593229 (25 bp)
CTCATCCTTCAAAGGTGTGGACAAG
LOC_Os06g33660
OsAffx.27918.1.S1_x_at--802--2135Chr07:22713530..22713662 (25 bp)
ACAGTTGGTCCAAAGATTGATGAGA
NONE
OsAffx.27918.1.S1_x_at--595--5151NONE
GCAACTGACAAGTTATCCGTCGGAT
NONE
OsAffx.27918.1.S1_x_at--691--10431Chr10:12480695..12480715 (21 bp)
TTATCCGTCGGATTCGATGCAGGAA
NONE
OsAffx.27918.1.S1_x_at--103--111Chr10:12480702..12480726 (25 bp)
ATTCGATGCAGGAAGCAGCCGCCGC
NONE
OsAffx.27918.1.S1_x_at--1119--4711Chr10:12480752..12480776 (25 bp)
GCTGTCGGATCCACCGCGGGAAGTC
NONE
OsAffx.27918.1.S1_x_at--335--4132Chr10:12480766..12480790 (25 bp)
CGCGGGAAGTCGTCAGCACCGTCGT
NONE
OsAffx.27918.1.S1_x_at--353--10851Chr10:12480856..12480880 (25 bp)
TTGGTGCTGCCGGATCTACCCGCAG
NONE
OsAffx.27918.1.S1_x_at--79--4811Chr10:12480877..12480901 (25 bp)
GCAGGAAGCCGCCATACTAAGAGGC
NONE
OsAffx.27918.1.S1_x_at--994--4411Chr10:12480887..12480911 (25 bp)
GCCATACTAAGAGGCGCCACCAAGA
NONE
OsAffx.27918.1.S1_x_at--585--971Chr10:12480958..12480982 (25 bp)
AGGAGCGGCACCACTGGTCGGGAGA
NONE
Target Sequence 
CTCATCCTTCAAAGGTGTGGACAAGGGTCAAGATGTGCAAATTATAGCTTGTGATGGTTGGTTTGGTATAGCAGTTAGAG
TTGGACAGTTGGTCCAAAGATTGATGAGATGCGGGCGTGCCAGTCAGTTTGATCCTGCAACTGACAAGTTATCCGTCGGA
TTCGATGCAGGAAGCAGCCGCCGCCGCCGCCACGCACGTAGCCATCGTCGCTGTCGGATCCACCGCGGGAAGTCGTCAGC
ACCGTCGTCACCGTCGGATCCACCGCGGGAAGCCGTCTCTACCGCCTCGGGCCACGGGAAGCGACCGGCGCCGTTGGTGC
TGCCGGATCTACCCGCAGGAAGCCGCCATACTAAGAGGCGCCACCAAGAGGGGAGGAGAGGGGGAGAGGGAGTAGCAGAG
AGGGGGCGGCAGAGGAGGAGCGGCACCACTGGTCGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27918.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis