Browse Element(s) Details


OsAffx.27920.1.S1_at

Description tigr:9634.m03162
TID=OsAffx.27920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3370011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33640Os.55529.1.S1_at11/116+19582326..19584411CAPIP1, putative, expressed
LOC_Os06g33650OsAffx.27917.1.S1_at10/116+19585428..19588626hypothetical protein
LOC_Os06g33650OsAffx.1755.1.S1_x_at2/116+19585428..19588626hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_x_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.1.S1_x_at1/116+19592749..19594298hypothetical protein
LOC_Os06g33669NANA6+19596284..19596641NA
LOC_Os06g33680OsAffx.27919.1.S1_at11/116+19598280..19602399hypothetical protein
LOC_Os06g33690Os.55529.1.S1_at2/116+19603065..19605119CAPIP1, putative, expressed
LOC_Os06g33700OsAffx.27920.1.S1_at11/116+19609357..19609802hypothetical protein
LOC_Os06g33710Os.4600.1.S1_at10/116+19613317..19618692Spermidine synthase 2, putative, expressed
LOC_Os06g33720Os.54557.1.S1_at10/116+19618926..19620613Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g33730OsAffx.4994.1.S1_at11/116+19627998..19628393hypothetical protein
LOC_Os06g33739Os.10731.2.A1_at1/116+19633177..19634533retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27920.1.S1_at--428--7111Chr06:19609401..19609425 (25 bp)
GTCAGCGAGGCAGCGGTGCACCTTC
LOC_Os06g33700
OsAffx.27920.1.S1_at--1048--7331Chr06:19609416..19609556 (25 bp)
GTGCACCTTCGAGTGGAACACGAGC
LOC_Os06g33700
OsAffx.27920.1.S1_at--948--5491Chr06:19609547..19609571 (25 bp)
GAACACGAGCGACATAGAAATGGCG
LOC_Os06g33700
OsAffx.27920.1.S1_at--1114--8351Chr06:19609573..19609597 (25 bp)
GGCGGTGGAGAATGCTTATCATGCT
LOC_Os06g33700
OsAffx.27920.1.S1_at--918--3011Chr06:19609583..19609607 (25 bp)
AATGCTTATCATGCTGCTTTGGCGG
LOC_Os06g33700
OsAffx.27920.1.S1_at--182--5091Chr06:19609649..19609673 (25 bp)
GCACCACACAGGCAGGGCATTTCAG
LOC_Os06g33700
OsAffx.27920.1.S1_at--1034--2111Chr06:19609656..19609680 (25 bp)
ACAGGCAGGGCATTTCAGACATCAT
LOC_Os06g33700
OsAffx.27920.1.S1_at--511--10331Chr06:19609668..19609692 (25 bp)
TTTCAGACATCATCGCAGTGGATGC
LOC_Os06g33700
OsAffx.27920.1.S1_at--1004--511Chr06:19609679..19609703 (25 bp)
ATCGCAGTGGATGCGGAATTGCGCC
LOC_Os06g33700
OsAffx.27920.1.S1_at--859--8131Chr06:19609724..19609748 (25 bp)
GGACAGGGTATTCTCCGCGCAGTTA
LOC_Os06g33700
OsAffx.27920.1.S1_at--615--4932Chr06:19609742..19609766 (25 bp)
GCAGTTACCGGCTTTCCTGACTCCA
LOC_Os06g33700
Target Sequence 
GTCAGCGAGGCAGCGGTGCACCTTCGAGTGGAACACGAGCGACATAGAAATGGCGGGGCGGTGGAGAATGCTTATCATGC
TGCTTTGGCGGCGGAGACGGGGAACACGGAAGGGGAAAGAGAGCACTTGGGGGCACCACACAGGCAGGGCATTTCAGACA
TCATCGCAGTGGATGCGGAATTGCGCCGGCGAGGTGGAGCCGTTCAAGGACAGGGTATTCTCCGCGCAGTTACCGGCTTT
CCTGACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis