Browse Element(s) Details


OsAffx.28250.1.S1_at

Description tigr:9635.m00300
TID=OsAffx.28250.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pathogenesis-related protein 1 - maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0375011/11Pathogenesis-related protein PRMS precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03720OsAffx.19542.3.S1_x_at7/117+1515832..1520054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03730Os.19861.1.S1_at11/117+1521964..1522842Pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03740OsAffx.16187.1.S1_at1/117+1528205..1535233SCP-like extracellular protein
LOC_Os07g03750OsAffx.28250.1.S1_at11/117+1537779..1538297Pathogenesis-related protein PRMS precursor, putative
LOC_Os07g03760OsAffx.16069.1.S1_at11/117+1539463..1541976Mov34/MPN/PAD-1 family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28250.1.S1_at--800--4292Chr07:1537812..1537836 (25 bp)
CCTCTCTGCCTGTTACTGTTAGTGG
LOC_Os07g03750
OsAffx.28250.1.S1_at--882--6771Chr07:1537823..1537847 (25 bp)
GTTACTGTTAGTGGCTGCGTCACTT
LOC_Os07g03750
OsAffx.28250.1.S1_at--1031--6171Chr07:1537863..1537887 (25 bp)
GAGGACTACCTGAACCCGCACAACG
LOC_Os07g03750
OsAffx.28250.1.S1_at--710--3911Chr07:1537922..1537946 (25 bp)
CTGGAACGACACTGTGGCGGCGTTC
LOC_Os07g03750
OsAffx.28250.1.S1_at--856--3011Chr07:1537954..1537978 (25 bp)
AATACGCGGCGGATCTGTACGCCGG
LOC_Os07g03750
OsAffx.28250.1.S1_at--261--9031Chr07:1537990..1538014 (25 bp)
TGCAGCCTTCGTCTACCGAGGACTA
LOC_Os07g03750
OsAffx.28250.1.S1_at--489--5971Chr07:1538019..1538043 (25 bp)
GAGAACCTGTATTTCAACTCCGATC
LOC_Os07g03750
OsAffx.28250.1.S1_at--97--2551Chr07:1538034..1538058 (25 bp)
AACTCCGATCAAAGCTCGACGGCGG
LOC_Os07g03750
OsAffx.28250.1.S1_at--1133--8451Chr07:1538068..1538092 (25 bp)
TGGCGTCGTGGGTGTCACCAACACT
LOC_Os07g03750
OsAffx.28250.1.S1_at--735--6251Chr07:1538094..1538118 (25 bp)
GATGGTGACTGGTACCACCACGACA
LOC_Os07g03750
OsAffx.28250.1.S1_at--1066--7711Chr07:1538171..1538195 (25 bp)
GGTGTGGTACAACTCGACGGACATC
LOC_Os07g03750
Target Sequence 
CCTCTCTGCCTGTTACTGTTAGTGGCTGCGTCACTTGCGGTGGCGACGCCGGAGGACTACCTGAACCCGCACAACGTGGC
CAGGGGCAACGTGGAAGTGCCGGCGGTGGTCTGGAACGACACTGTGGCGGCGTTCGCGGAGGAATACGCGGCGGATCTGT
ACGCCGGTGGCTGCCATCTGCAGCCTTCGTCTACCGAGGACTACGGGGAGAACCTGTATTTCAACTCCGATCAAAGCTCG
ACGGCGGCCGACGCCGTGGCGTCGTGGGTGTCACCAACACTTGATGGTGACTGGTACCACCACGACACCAACACCTGCAC
GGCGCCGGCGGGGGAGTCGTGCGGCCACTACACGCAGGTGGTGTGGTACAACTCGACGGACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis