Browse Element(s) Details


OsAffx.28295.1.S1_x_at

Description tigr:9635.m00529
TID=OsAffx.28295.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0590011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein
LOC_Os07g05870Os.57565.1.S1_at7/117+2817437..2821212expressed protein
LOC_Os07g05880Os.18840.1.S1_at11/117+2822624..2824937Kelch motif family protein, expressed
LOC_Os07g05890NANA7+2827967..2828317hypothetical protein
LOC_Os07g05900OsAffx.28295.1.S1_x_at11/117+2837776..2838279hypothetical protein
LOC_Os07g05910OsAffx.28296.1.S1_at10/117+2846747..2847231hypothetical protein
LOC_Os07g05920NANA7+2854479..2855022hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_x_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_at11/117+2857135..2857454hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28295.1.S1_x_at--1085--7211Chr07:2838141..2838165 (25 bp)
GTCGACGGCAAGCAAGTGAGGCTGT
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--304--2871Chr07:2838128..2838152 (25 bp)
AAGTGAGGCTGTTCCCGTGCCTCTT
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--482--9571Chr07:2838107..2838131 (25 bp)
TCTTCTGCGCCAAGACGTTCCGCAA
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--984--10591Chr07:2838105..2838129 (25 bp)
TTCTGCGCCAAGACGTTCCGCAAGT
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--714--4551Chr07:2838101..2838125 (25 bp)
GCGCCAAGACGTTCCGCAAGTCGCA
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--548--3231Chr07:2838097..2838121 (25 bp)
CAAGACGTTCCGCAAGTCGCAGGCG
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--1026--1391Chr07:2838095..2838119 (25 bp)
AGACGTTCCGCAAGTCGCAGGCGCT
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--679--4691Chr07:2838023..2838047 (25 bp)
GCTGGAACCCCAACGTCTACGGCGA
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--1029--8351Chr07:2837994..2838018 (25 bp)
GGCGGATCAGCGTCCATGCCCATCG
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--62--4431Chr07:2837834..2837858 (25 bp)
GCGCCGGTTTCGCTTCGACCGAAAG
LOC_Os07g05900
OsAffx.28295.1.S1_x_at--1060--4891Chr07:2837823..2837847 (25 bp)
GCTTCGACCGAAAGGGGCTCTTCCG
LOC_Os07g05900
Target Sequence 
GTCGACGGCAAGCAAGTGAGGCTGTTCCCGTGCCTCTTCTGCGCCAAGACGTTCCGCAAGTCGCAGGCGCTCGGCGGCCA
CCAGAACGCGCACCGGAAGGAGCGCGTCGCCGGCGGCAGCTGGAACCCCAACGTCTACGGCGACGGCGGCGGATCAGCGT
CCATGCCCATCGCCTCCCATGGCGTCACGGCGGCGGGGAGTAGTACGGCAGCCGACGGCCGGTGGTGCGGCGGCGCTGCC
AGCGACGACGACACAACGGCGGCGCCCATGCCTTCCCTCGGCTCAGGCTCGGCGGCGCTCGGCGCCGGCGCCGGTTTCGC
TTCGACCGAAAGGGGCTCTTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28295.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis