Browse Element(s) Details


OsAffx.28296.1.S1_at

Description tigr:9635.m00530
TID=OsAffx.28296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0591010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05880Os.18840.1.S1_at11/117+2822624..2824937Kelch motif family protein, expressed
LOC_Os07g05890NANA7+2827967..2828317hypothetical protein
LOC_Os07g05900OsAffx.28295.1.S1_x_at11/117+2837776..2838279hypothetical protein
LOC_Os07g05910OsAffx.28296.1.S1_at10/117+2846747..2847231hypothetical protein
LOC_Os07g05920NANA7+2854479..2855022hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_x_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05940Os.50053.1.A1_at11/117+2868986..2871132viviparous-14, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28296.1.S1_at--414--5391Chr07:2846796..2846820 (25 bp)
GAAGCTCGTCAACGCGTGATGTCGA
LOC_Os07g05910
OsAffx.28296.1.S1_at--442--4151NONE
CGCGTCGTCGCCGAAATTAAATGGA
NONE
OsAffx.28296.1.S1_at--178--2972Chr07:2847019..2847043 (25 bp)
AATGGAGCAGAATCCTTTGGTGGTA
LOC_Os07g05910
OsAffx.28296.1.S1_at--420--10251Chr07:2847034..2847058 (25 bp)
TTTGGTGGTAGATGGCGAACCTCGT
LOC_Os07g05910
OsAffx.28296.1.S1_at--1044--2612Chr07:2847051..2847075 (25 bp)
AACCTCGTCTGCGAGTTCTGTTGCC
LOC_Os07g05910
OsAffx.28296.1.S1_at--829--9491Chr07:2847076..2847100 (25 bp)
TCTCCTTCCACGGAGGCAGAAGGCG
LOC_Os07g05910
OsAffx.28296.1.S1_at--501--1471Chr07:2847093..2847117 (25 bp)
AGAAGGCGAGACCTCATCGATGCGT
LOC_Os07g05910
OsAffx.28296.1.S1_at--412--4271Chr07:2847104..2847128 (25 bp)
CCTCATCGATGCGTGATGTCGCTGA
LOC_Os07g05910
OsAffx.28296.1.S1_at--192--772Chr07:2847119..2847143 (25 bp)
ATGTCGCTGAGCAGAAGCCGGTGTT
LOC_Os07g05910
OsAffx.28296.1.S1_at--575--2631Chr07:2847133..2847157 (25 bp)
AAGCCGGTGTTAGCCGTAGTCGTGT
LOC_Os07g05910
OsAffx.28296.1.S1_at--423--8771Chr07:2847140..2847164 (25 bp)
TGTTAGCCGTAGTCGTGTGGTCGCC
LOC_Os07g05910
Target Sequence 
GAAGCTCGTCAACGCGTGATGTCGAGCAGCAGAAGTCGGTGGCGGCCGTAGGCGCGTCGTCGCCGAAATTAAATGGAGCA
GAATCCTTTGGTGGTAGATGGCGAACCTCGTCTGCGAGTTCTGTTGCCTCTCCTTCCACGGAGGCAGAAGGCGAGACCTC
ATCGATGCGTGATGTCGCTGAGCAGAAGCCGGTGTTAGCCGTAGTCGTGTGGTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis