Browse Element(s) Details


Os.50053.1.A1_at

Description gb:AK119780.1
DB_XREF= gi:37989403
TID=Os.50053.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D12, full insert sequence.
FL= gb:AK119780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0594011/11viviparous-14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05910OsAffx.28296.1.S1_at10/117+2846747..2847231hypothetical protein
LOC_Os07g05920NANA7+2854479..2855022hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_x_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05940Os.50053.1.A1_at11/117+2868986..2871132viviparous-14, putative, expressed
LOC_Os07g05950Os.16763.1.S1_at3/117+2880672..2880902expressed protein
LOC_Os07g05960OsAffx.5226.1.S1_at11/117+2881339..2890947expressed protein
LOC_Os07g05970NANA7+2893654..2894428hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009688biological_processabscisic acid biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50053.1.A1_at--15--8391Chr07:2870632..2870656 (25 bp)
GGCGAGCCATGCTTCGTTCCGCGCG
LOC_Os07g05940
Os.50053.1.A1_at--461--8451Chr07:2870680..2870704 (25 bp)
GGCCACGTGCTGTGCTTCGTCCACG
LOC_Os07g05940
Os.50053.1.A1_at--1025--3931Chr07:2870811..2870835 (25 bp)
CGGCACCTTCATTGGCGCCAACGAG
LOC_Os07g05940
Os.50053.1.A1_at--529--10871Chr07:2870822..2870846 (25 bp)
TTGGCGCCAACGAGCTGCAGCGACA
LOC_Os07g05940
Os.50053.1.A1_at--933--4751Chr07:2870835..2870859 (25 bp)
GCTGCAGCGACAAGCTTAGCTCAAA
LOC_Os07g05940
Os.50053.1.A1_at--599--10311Chr07:2870850..2870874 (25 bp)
TTAGCTCAAATTAATTAGCCAGTGA
LOC_Os07g05940
Os.50053.1.A1_at--509--1211Chr07:2870978..2871002 (25 bp)
AGTTTAGCGGTCATGCACTACTGAT
LOC_Os07g05940
Os.50053.1.A1_at--1044--4671Chr07:2870984..2871008 (25 bp)
GCGGTCATGCACTACTGATTTTTAA
LOC_Os07g05940
Os.50053.1.A1_at--417--151Chr07:2871008..2871032 (25 bp)
ATTAGTGCAGACAACGACCGCGTGT
LOC_Os07g05940
Os.50053.1.A1_at--681--3251Chr07:2871019..2871043 (25 bp)
CAACGACCGCGTGTGTGTATATGCA
LOC_Os07g05940
Os.50053.1.A1_at--95--271Chr07:2871037..2871061 (25 bp)
ATATGCATGTATACCTTTTACTGTA
LOC_Os07g05940
Target Sequence 
GGCGAGCCATGCTTCGTTCCGCGCGCCGGCGCCGCGGCGGAGGACGACGGCCACGTGCTGTGCTTCGTCCACGANGAGGA
GCGCGGCACGTCGGAGCTGGTGGTGGTGGACGCCGGCAGCGAGGCGATGGAGGAGGTCGCGGCCGTGAAGCTGCCGGGGC
GCGTGCCGTANGGATTGCNCGGCACCTTCATTGGCGCCAACGAGCTGCAGCGACAAGCTTAGCTCAAATTAATTAGCCAG
TGAAAAATCAAATTACAGAGTTGCTTAATTTTTTTANTAGTAGAACGCAACAGTAAAAAGAATTAACAGCAGTGAATTAT
TAGTTAATTAGCTAGGGAGTTGAAATAGTTTAGCGGTCATGCACTACTGATTTTTAATTAGTGCAGACAACGACCGCGTG
TGTGTATATGCATGTATACCTTTTACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50053.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis