Browse Element(s) Details


OsAffx.5226.1.S1_at

Description tigr:9635.m00535
TID=OsAffx.5226.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161540 hypothetical
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0596011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05930OsAffx.16111.2.S1_x_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05940Os.50053.1.A1_at11/117+2868986..2871132viviparous-14, putative, expressed
LOC_Os07g05950Os.16763.1.S1_at3/117+2880672..2880902expressed protein
LOC_Os07g05960OsAffx.5226.1.S1_at11/117+2881339..2890947expressed protein
LOC_Os07g05970NANA7+2893654..2894428hypothetical protein
LOC_Os07g05984Os.46862.1.S1_at5/117+2897479..2899499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06000OsAffx.20329.1.S1_at6/117+2900246..2903204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06010NANA7+2905648..2906989transposon protein, putative, unclassified
LOC_Os07g06020NANA7+2909158..2915907retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5226.1.S1_at--1043--5551Chr07:2882051..2882072 (22 bp)
GAAAGCCTTCAACTTCTTGGAGACA
LOC_Os07g05960
OsAffx.5226.1.S1_at--674--311Chr07:2881698..2881722 (25 bp)
ATACCTGTTGCGAAGAGATCCCTGG
LOC_Os07g05960
OsAffx.5226.1.S1_at--389--6031Chr07:2881684..2881708 (25 bp)
GAGATCCCTGGAGCGTTTCGTATTC
LOC_Os07g05960
OsAffx.5226.1.S1_at--496--6871Chr07:2881665..2881689 (25 bp)
GTATTCCAAGTGAAGGCGCTCCTAC
LOC_Os07g05960
OsAffx.5226.1.S1_at--468--2551Chr07:2881638..2881662 (25 bp)
AACTGCTCTACCGAGGAGACTTTCT
LOC_Os07g05960
OsAffx.5226.1.S1_at--150--8011Chr07:2881613..2881637 (25 bp)
GGATGGGTACATACATACTCTGCAC
LOC_Os07g05960
OsAffx.5226.1.S1_at--270--3131Chr07:2881584..2881608 (25 bp)
AATTTCTGTTCCTGGCAACGTCGAG
LOC_Os07g05960
OsAffx.5226.1.S1_at--42--7251Chr07:2881544..2881568 (25 bp)
GTCGCCATTGTTGCTCTAATTTGCT
LOC_Os07g05960
OsAffx.5226.1.S1_at--211--3171Chr07:2881472..2881496 (25 bp)
AATTGGTGAGCTCCCAGGTCTACGG
LOC_Os07g05960
OsAffx.5226.1.S1_at--551--6311Chr07:2881440..2881464 (25 bp)
GATGACAGCCCGAACGATGAGCAAG
LOC_Os07g05960
OsAffx.5226.1.S1_at--912--1391Chr07:2881406..2881430 (25 bp)
AGACTGATCCTGAAACCCCAGCTGA
LOC_Os07g05960
Target Sequence 
GAAAGCCTTCAACTTCTTGGAGACACATTTCGGTCAACATAATGATATTATACTTCAGATGATAAAATCACTTCAGAAAG
CTACAAAAACAATCCAAACCATATGTGCAGAGGCTAAGGGCCACAAGCGAACAATGATCACAAGCAAGATACCTGTTGCG
AAGAGATCCCTGGAGCGTTTCGTATTCCAAGTGAAGGCGCTCCTACACAACTGCTCTACCGAGGAGACTTTCTGGATGGG
TACATACATACTCTGCACCCCCAATTTCTGTTCCTGGCAACGTCGAGAGATATACATAGATGGTCGCCATTGTTGCTCTA
ATTTGCTAAACCGTTGTATGACAGGCAATCTGAGGCATAAGGACTTACAGGGTCAATTGGTGAGCTCCCAGGTCTACGGC
AGCGTCGATGACAGCCCGAACGATGAGCAAGAACAGATGGAGACTGATCCTGAAACCCCAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis